Pinned Repositories
Anisotropy
These are programs that deal with anisotropy (both resolution and sampling)
ansible-role-nvidia-driver
Fork of NVIDIA Ansible role w/ added support for Debian.
appion-protomo
A Docker-based distribution of Appion-Protomo.
image-folder-shrink
Data reduction script invoked by retentioner via the imshrink function.
leginon
leginon-tutorial
Docker image for leginon with simulated data for tutorial purpose
ptolemy
Public release of Ptolemy package for automated targeting of Cryo-EM grids
redmine2github
Scripts to migrate redmine tickets to github issues
SpotitonTR
Code for Spotiton Time Resolve experiments
topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples
New York Structural Biology Center / SEMC's Repositories
nysbc/Anisotropy
These are programs that deal with anisotropy (both resolution and sampling)
nysbc/appion-protomo
A Docker-based distribution of Appion-Protomo.
nysbc/leginon-tutorial
Docker image for leginon with simulated data for tutorial purpose
nysbc/ansible-role-nvidia-driver
Fork of NVIDIA Ansible role w/ added support for Debian.
nysbc/cuda
Useful resources for learning CUDA and its Python variants.
nysbc/fscupload
Use a Django web application to calculate a 3D Fourier shell correlation remotely.
nysbc/image-folder-shrink
Data reduction script invoked by retentioner via the imshrink function.
nysbc/imod_singularity
A singularity container for IMOD.
nysbc/leginon
nysbc/motioncor2-docker
Instructions for building a CUDA 8.0-enabled Docker container to run MotionCor2_1.1.0.
nysbc/ptolemy
Public release of Ptolemy package for automated targeting of Cryo-EM grids
nysbc/redmine2github
Scripts to migrate redmine tickets to github issues
nysbc/SpotitonTR
Code for Spotiton Time Resolve experiments
nysbc/tiltgroup-wrangler
nysbc/topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples
nysbc/appion-slurm
Fork of Appion that consists of the minimum needed for everyday operations at SEMC.
nysbc/emhub
Web application for monitor EM results
nysbc/SEMCf
Python code facility monitor system (temperatures, etc).
nysbc/singularity-centos7-cuda8
nysbc/Tilted-Collection
Tilted Single-Particle CryoEM Data Collection
nysbc/xmipp
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
nysbc/xmippCore
Core functions for Xmipp and sharing with other packages (like Scipion)