nyuhuyang

RNAseq_pipeline

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

scRNAseq-BladderCancer

Collaboration with David Mulholland at Mount Sinai for invasive Bladder Cancer

scRNAseq-GBM

scRNAseq-Ibrutinib

scRNAseq-Immunosurveillance

This code developed for the study of "Immunosurveillance of HR+ breast cancer - Prophylactic and therapeutic effects of nicotinamide"

scRNAseq-LungCancer

single cell RNA-Seq analysis of human lung cancer. Data from Vivek Mittal <vim2010@med.cornell.edu> and postdoc Sharrell B. Lee <sbl2002@med.cornell.edu>

scRNAseq-MouseAgedEyes

single cell RNA sequencing for aged mouse choroid

scRNAseq-MouseEyes

single cell RNA sequencing for mouse choroid

scRNAseq-MouseSkinEpithelia

Developed scripts for single-cell RNA-seq study in Yejing Ge et al, The aging skin microenvironment dictates stem cell behavior. PNAS (2020). It focuses on comparing Young vs. Aged mouse skin epithelium with single-cell RNA-seq.

scRNAseq-SSCs

Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

nyuhuyang/scRNAseq-SSCs

Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

nyuhuyang/scRNAseq-BladderCancer

Collaboration with David Mulholland at Mount Sinai for invasive Bladder Cancer

nyuhuyang/scRNAseq-LungCancer

single cell RNA-Seq analysis of human lung cancer. Data from Vivek Mittal <vim2010@med.cornell.edu> and postdoc Sharrell B. Lee <sbl2002@med.cornell.edu>

nyuhuyang/scRNAseq-GBM

nyuhuyang/RNAseq_pipeline

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

nyuhuyang/scRNAseq-Ibrutinib

nyuhuyang/pyShinyCell

nyuhuyang/scRNAseq-BladderCancerImmune

nyuhuyang/scRNAseq-Lung

Collaboration with Renat Shaykhiev (res2003@med.cornell.edu) for lung development project

nyuhuyang/SeuratExtra

extend functions to support Seurat

nyuhuyang/docs

nyuhuyang/Dropbox-Uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

nyuhuyang/infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

nyuhuyang/interview

interview questions

nyuhuyang/nyuhuyang

Config files for my GitHub profile.

nyuhuyang/scATAC_scRNA-seq

Collaborate with David Falvo (daf2042@med.cornell.edu) and Rohit Chandwani (daf2042@med.cornell.edu)

nyuhuyang/scRNAseq-AIM

nyuhuyang/scRNAseq-Histiocytosis

Collaborated with professor Frederic Geissmann(geissmaf@mskcc.org),Rocio Vicario(vicarior@mskcc.org), Maria Pokrovskii(mpokrovskii@gmail.com)

nyuhuyang/scRNAseq-HIV

collaborate with Micheal Corley for HIV single-cell human specimen

nyuhuyang/scRNAseq-Lorenzo-LS-9829

nyuhuyang/scRNAseq-Lung-Cancer

Atlas of cellular heterogeneity along the proximal-distal airway axis of human lung and lung cancer

nyuhuyang/scRNAseq-MCL

single cell RNA seq analysis for Mantle Cell Lymphoma

nyuhuyang/scRNAseq-MCL_TCR_BCR

mantle cell lymphoma with single cell RNA-seq, scRNAseq-TCR and scRNAseq-BCR

nyuhuyang/scRNAseq-PBMC-IBD

collaborate with Randy Longman <ral2006@med.cornell.edu>

nyuhuyang/scRNAseq-SSC

Collaboration with Marco Seandel, M.D., PhD. (mas9066@med.cornell.edu)

nyuhuyang/seurat-wrappers

Community-provided extensions to Seurat

nyuhuyang/snRNAseq-Alzheimer

collaboration with Rocio Vicario (vicarior@mskcc.org)

nyuhuyang/snRNAseq-COVID_testis

collaborate with Miguel Brieno-Enriquez brienoenriquezma@mwri.magee.edu

nyuhuyang/snRNAseq-macrophages

Collaboration with Cox, Nehemiah/Sloan Kettering Institute <coxn@mskcc.org> for Diet-regulated macrophages research

nyuhuyang/tradingview-alpaca-strategy-alert-webhook-heroku