oazarate

Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

BoostMEC

A pipeline for the prediction of CRISPR-Cas9 editing efficiency

creative-platform

Creative platform application for Northwestern EECS 496-7 Advanced Deep Learning

crisporPaper

Code for the CRISPOR article, all data and code to create figures and analysis

CRISPR-TRAP-seq

This is a ML learning model to predict the gRNA efficiency of trap-based editing system. eg.ABE, CBE, Cas9

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

DeepHF

Core code for the DeepHF prediction tool

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

NuPoP

An R package for NUcleosome POsitioning Prediction

stat465

Code and example data for guest lecture for Northwestern STAT 465: Statistical Methods for Bioinformatics and Computational Biology

oazarate/BoostMEC

A pipeline for the prediction of CRISPR-Cas9 editing efficiency

oazarate/Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

oazarate/creative-platform

Creative platform application for Northwestern EECS 496-7 Advanced Deep Learning

oazarate/crisporPaper

Code for the CRISPOR article, all data and code to create figures and analysis

oazarate/CRISPR-TRAP-seq

This is a ML learning model to predict the gRNA efficiency of trap-based editing system. eg.ABE, CBE, Cas9

oazarate/deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

oazarate/DeepHF

Core code for the DeepHF prediction tool

oazarate/examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

oazarate/NuPoP

An R package for NUcleosome POsitioning Prediction

oazarate/stat465

Code and example data for guest lecture for Northwestern STAT 465: Statistical Methods for Bioinformatics and Computational Biology

oazarate/tensorflow-char-rnn

Char-RNN implemented using TensorFlow.

oazarate/tutorials

PyTorch tutorials.

oazarate/volcano_plots