/cp2k_xas_tool

Broaden the XAS spectra simulated by CP2K.

Primary LanguageFortranGNU General Public License v2.0GPL-2.0

cp2k_xas_tool

Broaden the XAS spectra simulated by CP2K.

input file:

!---template of input file: axas.in----

1

c6h6-at at

0.3 8.0

800 -231.99076834049202

1 -221.53324945125019 10.66107591480774

.false.

1 260

1

Comments for the input files

n #number of excited atoms

t_ifile t_ofile

sigma_min sigma_max

ne egs

iatom(1) eexcit(1) eb(1)

iatom(2) eexcit(2) eb(2)

...

iatom(i) eexcit(i) eb(i)

...

iatom(n) eexcit(n) eb(n)

lsum #logical variable. if true, sum up the spectra of the selected atoms

nsatom # number of selected atoms

ebmin #the starting energy point of broadened XAS data

isatom(1)... isatom(i)... isatom(nsatom) #the index of selected atoms

Notes for the remaining variables**

t_ifile: prefix of input files of spectra (e.g., if aaa-at1.spectrum is generated by cp2k, then 'aaa-at' will be used for t_ifile)

t_ofile: prefix of output file.

sigma_min: minimum of sigma (i.e.,$\sigma_\mathrm{min}$ (in eV).

sigma_max: maximum of sigma (i.e.,$\sigma_\mathrm{max}$ (in eV).

ne: number of points in the energy axis.

egs: total energy of ground state (in Hartree

iatom(i): index of excited ato

eexcit(i): total energy of excited state in the DSCF (i.e., deltaSCF) calculations for the excited atom i (in Hartree).

eb(i): the ionization energy (or binding energy) in the TP_HH calculations for the excited atom i (in Hartree, positive).

References

The principles of XAS simulations in CP2K code:

Marcella Iannuzzi and Jürg Hutter, Inner-shell spectroscopy by the Gaussian and augmented plane wave method, Phys. Chem. Chem. Phys., 2007,9, 1599-1610; DOI: 10.1039/B615522G.

If you use this tool to post-process the XAS data of CP2K, please cite our paper:

Zhufeng Hou, Xianlong Wang, Takashi Ikeda, Shen-Feng Huang, Kiyoyuki Terakura, Mauro Boero, Masaharu Oshima, Masa-aki Kakimoto, and Seizo Miyata, Effect of Hydrogen Termination on Carbon K-Edge X-ray Absorption Spectra of Nanographene, J. Phys. Chem. C 2011 115 (13), 5392-5403 DOI: 10.1021/jp110879d.