obarnstedt
Neuroscientist at DZNE Bonn, interested in neuronal circuits guiding learned behaviours
@LINCellularNeuroscience Bonn, Germany
Pinned Repositories
pomidaq
Portable Miniscope Data Acquisition
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
caiman-tools
Tools for working with CaImAn (Giovannucci et al., 2019, eLife)
CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
CEBRA-demos
CEBRA Demo Notebooks. Please see all of them at the URL below:
dHPC-NAc
Repository containing code for Barnstedt et al., Nature Communications (2024)
lindoscope-2021
Course content for the lindoscope data analysis labs
LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
MouseFlow
A Python toolbox to quantify facial and bodily movement in headfixed mice.
septum-vta
Repository containing code for Mocellin et al., Neuron (2024)
obarnstedt's Repositories
obarnstedt/LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
obarnstedt/caiman-tools
Tools for working with CaImAn (Giovannucci et al., 2019, eLife)
obarnstedt/dHPC-NAc
Repository containing code for Barnstedt et al., Nature Communications (2024)
obarnstedt/septum-vta
Repository containing code for Mocellin et al., Neuron (2024)
obarnstedt/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
obarnstedt/CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
obarnstedt/CEBRA-demos
CEBRA Demo Notebooks. Please see all of them at the URL below:
obarnstedt/lindoscope-2021
Course content for the lindoscope data analysis labs
obarnstedt/MouseFlow
A Python toolbox to quantify facial and bodily movement in headfixed mice.