Pinned Repositories
APA
Used for Alternative Polyadenylation Analysis
bioconda-recipes
Conda recipes for the bioconda channel.
converters
different file format converters
CUHK-Thesis-Template
cutqc
A simple wrapper for cutadapt and fastqc, and generate fastqc report with rmarkdown.
miRDP2_docker
Docker container for miRDeep-P2 miRNA identification pipline
scSpotlight
A shiny app for single cell analysis based on Seurat
ShinySyn
A shiny application to visualize MCscan result
obenno's Repositories
obenno/ShinySyn
A shiny application to visualize MCscan result
obenno/scSpotlight
A shiny app for single cell analysis based on Seurat
obenno/cutqc
A simple wrapper for cutadapt and fastqc, and generate fastqc report with rmarkdown.
obenno/miRDP2_docker
Docker container for miRDeep-P2 miRNA identification pipline
obenno/APA
Used for Alternative Polyadenylation Analysis
obenno/bioconda-recipes
Conda recipes for the bioconda channel.
obenno/converters
different file format converters
obenno/CUHK-Thesis-Template
obenno/cuhkthesis
Latex thesis template for CUHK graduate students
obenno/datasciencecoursera
obenno/emacs.d
An Emacs configuration bundle with batteries included
obenno/emacs.d-1
Efficient Emacs setup.
obenno/gitignore
A collection of useful .gitignore templates
obenno/log4j-detector
Scanner that detects vulnerable Log4J versions (CVE-2021-44228, CVE-2021-45046, etc) on your file-system within any application. It is able to even find instances that are hidden several layers deep. Works on Linux, Windows, and Mac, and everywhere else Java runs, too!
obenno/miscs
obenno/nanom6A
obenno/obenno.r-universe.dev
obenno/parallel-fastq-dump
parallel fastq-dump wrapper
obenno/PHAS_Discovery
obenno/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
obenno/scATAC-seq
scATAC-seq pipeline based on nextflow
obenno/scRNA-seq
scRNA-seq pipeline implemented with nextflow
obenno/scSpotlight_docs
Documentation website for scSpotlight, built with blogdown, hugo and relearn theme
obenno/Shiny_BLAST
obenno/Soybean_salinity_ONT_DRS
Repo of scripts for analyzing soybean ONT DRS transcriptome under salt stress
obenno/StarScope
ThunderBio scRNA-seq pipeline
obenno/trackcluster
An analysis pipeline for Nanopore direct-RNA sequencing
obenno/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
obenno/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing