Pinned Repositories
deepvariant-on-spark
demo_case
a repository with toy ref genome and fastq data
GATK-Germline-Snps-Indels
GATK-Germline-Snps-Indels WDL workflows
sample-sheet
Parse Illumina sample sheets with Python
PEAT
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
deepvariant-on-spark
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
JSON-schemas
JSON schemas for genomics and health data exchange and forms
somatic_pipeline
Computational pipeline for somatic and germline variant calling and annotation
obigbando's Repositories
obigbando/GATK-Germline-Snps-Indels
GATK-Germline-Snps-Indels WDL workflows
obigbando/deepvariant-on-spark
obigbando/demo_case
a repository with toy ref genome and fastq data