/odf-data-extraction

Primary LanguagePython

ODF OPEN DATA EXTRACTION SCRIPTS

Bug fixes and development notes

Please feel free to submit any suggestions and bug fixes by creating an issue in the "Issues" tab on Github.

To contribute code, please submit a pull request using the "Pull Requests" section in Github.

Please direct any other code-related quries to: jurie.germishuys[at]combine.se

Open Data Search Engines

  1. Google Dataset Search (BETA) https://toolbox.google.com/datasetsearch
  2. Ocean Data Platform by Cognite Data Fusion (UNDER CONSTRUCTION) https://www.oceandata.earth/
  3. EU Open Data Portal: https://data.europa.eu/euodp/en/data/

FAIR Data Practices

Useful data endpoints for current ODF use cases

WFS (data) / WMS (images) / CWS (metadata) (see http://www.opensealab.eu/data2019)
Exposure

https://ows.emodnet-bathymetry.eu/

  • WFS
  • WMS
  • CWS
Shipping traffic and main ports

https://ows.emodnet-humanactivities.eu/

  • WFS
  • WMS
Seabed substrate

http://drive.emodnet-geology.eu/

  • WFS
  • WMS
  • CWS
REST API
Depth (depth_sample and depth_profile)

https://rest.emodnet-bathymetry.eu/

Salinity, Temperature

Baltic Sea: https://opendata-download-metobs.smhi.se/api
North Sea: ftp://vftp2.ifremer.fr/public/seadatanet-north_sea-temperaturesalinity_aggregated/SDC_NS_DATA_V1/

PACKAGES

  1. http://geopandas.org/
  2. https://geopython.github.io/OWSLib/
  3. https://www.geotools.org/ (JAVA)
  4. https://python-visualization.github.io/folium/
  5. https://pypi.org/project/keplergl/
  6. https://pypi.org/project/PyCRS/

REFERENCES

  1. Marine Data Portals: http://www.coastalwiki.org/wiki/Marine_data_portals_and_tools#Data_tools
  2. EMODNET: http://www.emodnet.eu/
  3. SMHI Oceanographic Data documentation: http://opendata.smhi.se/apidocs/ocobs/index.html
  4. Species data: https://www.gbif.org/occurrence/download/0036968-190918142434337
  5. Seadatanet: https://www.seadatanet.org/
  6. Research on Killer Shrimp: https://www.researchgate.net/publication/251571516_A_Preliminary_Assessment_of_the_Impact_of_Dikerogammarus_villosus_on_Ecological_status_for_the_Water_Framework_Directive