Define additional features for developement (discussion)
Opened this issue · 1 comments
broncio123 commented
We need to think about additional features for the package @ococrook
As a first approach, we can start by asking what features hdxstats could have that are implemented by other HDX analysis packages
- DynaX https://www.waters.com/webassets/cms/library/docs/720005145en.pdf
- HDExaminer https://www.leaptec.com/products/hdexaminer-from-sierra-analytics
Also, I wonder if we it's worth considering some of the recommendations described in this nature article
https://www.nature.com/articles/s41592-019-0459-y#Sec3
ococrook commented
priority:
- 3D structure viewer: #9 (comment).
- woods plots, https://github.com/jpquast/protti/blob/master/R/woods_plot.R, https://hadexversum.github.io/HaDeX/reference/woods_plot.html
- contact maps: https://github.com/jpquast/protti/blob/master/R/create_structure_contact_map.R
wish list
- Combine information from multiple charge states of the same peptide
- Length-bias statistics