ococrook/hdxstats

Issues

• xticklabels in manhattan plot now showing single residue numbers instead of an interval

  #39 opened a year ago by broncio123
  0

• hdxdifference function - a suggestion

  #44 opened a year ago by nlgittens
  2

• Unit testing (later)

  #17 opened 2 years ago by broncio123
  0

• AAString + Start & End residues

  #26 opened 2 years ago by nlgittens
  2

• hdxdifference p-value signs

  #43 opened 2 years ago by nlgittens
  1

• Residue start and end in ComputeAverageMap function

  #42 opened 2 years ago by nlgittens
  1

• Replace use of print with `rlog` functions for baseline `hdxstats` modules. Assign: @ococrook

  #41 opened 2 years ago by broncio123
  0

• Outstanding issues for HDX streamline features

  #38 opened 2 years ago by broncio123
  3

• Replace the use of slots with Accessors, as suggested in Bioconductor guidelines. Assign: @broncio123

  #40 opened 2 years ago by broncio123
  0

• 3D structure viewer

  #9 opened 2 years ago by ococrook
  5

• Add routines for normalisation by time intercept and 'undeuterated' peptide mass into normalisehdx

  #31 opened 2 years ago by broncio123
  2

• object undefined in hdxdifference function

  #35 opened 2 years ago by broncio123
  3

• processFunctional error

  #36 opened 2 years ago by nlgittens
  2

• manhattan documentation

  #20 opened 2 years ago by ococrook
  0

• Add residue numbers to average plots and heatmap plots

  #28 opened 2 years ago by broncio123
  1

• Residue plot colours

  #7 opened 2 years ago by ococrook
  5

• Is hmpplot functional?

  #34 opened 2 years ago by nlgittens
  1

• plotEpitopeMap peptides too long

  #37 opened 2 years ago by nlgittens
  1

• volcanoe plot

  #27 opened 3 years ago by ococrook
  0

• Manhatten plot - multiple charge states

  #8 opened 3 years ago by nlgittens
  8

• update readme

  #19 opened 3 years ago by ococrook
  0

• Vignette's content enhancements

  #15 opened 3 years ago by broncio123
  2

• FitUptakeKinetics - error messages

  #23 opened 3 years ago by nlgittens
  12

• Vignettes should be broken down

  #11 opened 3 years ago by broncio123
  1

• bioconductor check

  #21 opened 3 years ago by ococrook
  0

• Define additional features for developement (discussion)

  #16 opened 3 years ago by broncio123
  1

• Glossary (optional)

  #14 opened 3 years ago by broncio123
  0

• Add executing scripts as part of tutorials or examples of use

  #13 opened 3 years ago by broncio123
  0

• Fix documentation formatting

  #12 opened 3 years ago by broncio123
  0

• Exporting results

  #6 opened 3 years ago by ococrook
  2

• %D uptake vs #D uptake

  #4 opened 3 years ago by nlgittens
  3

• Deuterium uptake plotting - linear vs semi-log

  #3 opened 3 years ago by nlgittens
  3

• Heat map cosmetics

  #5 opened 3 years ago by nlgittens
  1