Pinned Repositories
adaptivebandbench
Benchmark on adaptive banded algorithm
comb
comb aligner -- a graphical nucleotide sequence alignment tool
dozeu
SIMD-parallel BLAST X-drop DP on sequence graphs
insn_bench_aarch64
Instruction latency & throughput profiler for AArch64
libgaba
Adaptive semi-global banded alignment on string graphs
minialign
[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads
opa64
Armv8 A64 Assembly & Intrinsics Guide Server
rbread
Header-only, gzread-like reader for gzip, bz2, and xz.
tinymasker
ultrasensitive alignment for masking repeats on assembly contigs
udon
BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
ocxtal's Repositories
ocxtal/minialign
[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads
ocxtal/libgaba
Adaptive semi-global banded alignment on string graphs
ocxtal/insn_bench_aarch64
Instruction latency & throughput profiler for AArch64
ocxtal/opa64
Armv8 A64 Assembly & Intrinsics Guide Server
ocxtal/dozeu
SIMD-parallel BLAST X-drop DP on sequence graphs
ocxtal/adaptivebandbench
Benchmark on adaptive banded algorithm
ocxtal/udon
BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
ocxtal/rbread
Header-only, gzread-like reader for gzip, bz2, and xz.
ocxtal/tinymasker
ultrasensitive alignment for masking repeats on assembly contigs
ocxtal/diffbench
Benchmark on difference algorithm
ocxtal/nd
streamed blob manipulator
ocxtal/exec-commands
scan markdown files and execute `console` blocks
ocxtal/unittest.h
simple, single-header unittesting framework for pure C99 codes
ocxtal/miura
Miura-fold pattern generator
ocxtal/act-local-cache-server
save GitHub Actions artifacts and caches in your local
ocxtal/ge
grep and edit git-tracked files in bulk
ocxtal/ocxtal.github.io
ocxtal/pbsim3
PBSIM3: a simulator for all types of PacBio and ONT long reads
ocxtal/xd
SIMD-parallel ultrafast binary dump
ocxtal/bioconda-recipes
Conda recipes for the bioconda channel.
ocxtal/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
ocxtal/chalk
colorscheme collection for TextMate (Sublime Text), vim and pygments.
ocxtal/libBigWig
A C library for handling bigWig files
ocxtal/ohayo
Manipulating PC power button via CH340 relay module
ocxtal/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
ocxtal/smith-waterman-simd
ocxtal/vfdc
table clock with NEC LD8035 VFD tubes on PSoC5LP
ocxtal/vg
tools for working with genome variation graphs
ocxtal/xbyak_aarch64
ocxtal/xopen
open files for buffered reading and writing in #golang