Pinned Repositories
bigartm
Fast topic modeling platform
bigartm-book
Topic modeling with BigARTM: an interactive book
bigartm-install
CI validation of BigARTM installation procedures
book
comorment-ldsc-legacy
cppDERIVEST
C++ port of "Adaptive Robust Numerical Differentiation"
dart
Dynamic Animation and Robotics Toolkit
gwas101
ldsc
LD Score Regression (LDSC)
mbsystem
Clone of http://www.ldeo.columbia.edu/res/pi/MB-System/
ofrei's Repositories
ofrei/cppDERIVEST
C++ port of "Adaptive Robust Numerical Differentiation"
ofrei/gwas101
ofrei/ldsc
LD Score Regression (LDSC)
ofrei/mbsystem
Clone of http://www.ldeo.columbia.edu/res/pi/MB-System/
ofrei/bigartm
Fast topic modeling platform
ofrei/comorment-ldsc-legacy
ofrei/docker-flask-api
Trying to learn from https://bpostance.github.io/posts/docker-fask-api/
ofrei/eas_partitioned_ldscore
Partitioned LD Scores for the EAS population
ofrei/egrm
ofrei/FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
ofrei/flask-on-docker
Flask + Docker
ofrei/genesets
ofrei/googletest
Google Test
ofrei/lava
ofrei/lava-partitioning
Partitioning algorithm developed for LAVA
ofrei/ldsc-docker
ofrei/ldsc_matlab
Matlab port of LD score regression (no practical use, just fun / learning)
ofrei/libplinkio
A small C and Python library for reading PLINK genotype files.
ofrei/mbsystem-docker
Docker image for mbsystem
ofrei/mixer
Causal Mixture Model for GWAS summary statistics
ofrei/mixertest
ofrei/opensnp
Scripts for analysis of openSNP dataset
ofrei/Popcorn
Software for estimating correlation of trait effect sizes across populations
ofrei/PRSice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
ofrei/pyflow
A lightweight parallel task engine
ofrei/PySnpTools
A Python library for reading and manipulating genetic data.
ofrei/regenie
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
ofrei/SIMDxorshift
Fast random number generators: Vectorized (SIMD) version of xorshift128+
ofrei/switchError
Compute switch error rates
ofrei/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release