Pinned Repositories
2024_interview
ai_handson
AmplificationTimeR
Code for timing amplifications
battenberg
Battenberg R package for subclonal copynumber estimation
CapSeg
CapSeg - Copy Number from Exome Sequencing
CharGer
Characterization of Germline variants
Cottrazm
Construct Tumor Transition Zone Microenvironment
dpclust3p
Dirichlet Process Clustering Pre-Processing Pipeline
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
MutationTimeR
An R package to time somatic mutations
oghzzang's Repositories
oghzzang/ai_handson
oghzzang/2024_interview
oghzzang/AmplificationTimeR
Code for timing amplifications
oghzzang/battenberg
Battenberg R package for subclonal copynumber estimation
oghzzang/CapSeg
CapSeg - Copy Number from Exome Sequencing
oghzzang/CharGer
Characterization of Germline variants
oghzzang/Cottrazm
Construct Tumor Transition Zone Microenvironment
oghzzang/dpclust3p
Dirichlet Process Clustering Pre-Processing Pipeline
oghzzang/gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
oghzzang/MutationTimeR
An R package to time somatic mutations
oghzzang/nextflow-oje
oghzzang/sarek_dn
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
oghzzang/snubioinfo-test-git
oghzzang/tutorial
oghzzang/yart
RMarkdown Template for writing PDF reports
oghzzang/pgsc_calc
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
oghzzang/PhylogicNDT_focal
oghzzang/SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
oghzzang/usb-modules-v2