ohdongha
I study extremophyte and other plant genomes and develop tools to compare genomes and GRNs,
Computercraft Baton Rouge, LA
Pinned Repositories
BrassicaceaeGRN
spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
Genome-Toolbox
Custom python scripts useful for working with genome assemblies and annotations
GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
make_lastz_chains
Portable solution to generate genome alignment chains using lastz
minimal
Minimal is a Jekyll theme for GitHub Pages
ohdongha.github.io
Personal page: https://ohdongha.github.io
OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
Re-OrthNet
OrthNet constructed with the presence or absence of conservation in REgulatory features (user-defined) as the edges property (under construction)
ohdongha's Repositories
ohdongha/OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
ohdongha/Genome-Toolbox
Custom python scripts useful for working with genome assemblies and annotations
ohdongha/GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
ohdongha/machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
ohdongha/make_lastz_chains
Portable solution to generate genome alignment chains using lastz
ohdongha/minimal
Minimal is a Jekyll theme for GitHub Pages
ohdongha/ohdongha.github.io
Personal page: https://ohdongha.github.io
ohdongha/Re-OrthNet
OrthNet constructed with the presence or absence of conservation in REgulatory features (user-defined) as the edges property (under construction)