Pinned Repositories
MAGIC
The Metagenome-Assembled Genome Inventory for Children (MAGIC)
metapi
A general metagenomics data mining system focus on robust microbiome research
metapi-manuscript
Writting metapi manuscript using manubot and markdown since 2020
ohmeta.github.io
Research Blog: https://ohmeta.github.io
oral-assembly
Human oral metagenome-assembly-genome
qiimepi
Snakemake version of QIIME2
quantpi
Microbiome profiling
rnapi
RNA seq analysis pipeline
sshtk
SSH toolkit
storepi
More economical and efficient storage for sequencing data
ohmeta's Repositories
ohmeta/metapi
A general metagenomics data mining system focus on robust microbiome research
ohmeta/quantpi
Microbiome profiling
ohmeta/rnapi
RNA seq analysis pipeline
ohmeta/MAGIC
The Metagenome-Assembled Genome Inventory for Children (MAGIC)
ohmeta/qiimepi
Snakemake version of QIIME2
ohmeta/sshtk
SSH toolkit
ohmeta/storepi
More economical and efficient storage for sequencing data
ohmeta/callpi
Calling SNP, SNV, CNV, and other genotyping information from metagenomics sequencing data
ohmeta/camipi
Upload data to CAMI community
ohmeta/crosspi
Crosstalk of microbes, viruses and host
ohmeta/flupi
Influenza viruses analysis pipeline
ohmeta/growpi
Microbial community grow rate profiling pipeline (WIP)
ohmeta/inStrain
Bioinformatics program inStrain
ohmeta/mpsepi
Microbiota Process and Visualization pipeline based on the MicrobiotaProcess R Package
ohmeta/simpi
Simulate metagenomics sequencing data for complex microbiome community of bacteriome, archaeome, virome, mycobiome, mobilome and resistome.
ohmeta/strainpi
A pipeline for identify strains from metagenomics data
ohmeta/tbpi
T/B cell repertoires profiling
ohmeta/amdpi
AMD: research power CPU
ohmeta/archpi
Archaeology pieline for ancient genome and microbiome
ohmeta/crisprpi
ohmeta/dnbtk
A toolkit to manage raw data from DNB sequencing platform
ohmeta/foldpi
Snakemake version of AlphaFold
ohmeta/gtdb-rev
ohmeta/jobtk
Some utils related with Sun Grid Engine and SLURM system
ohmeta/journal-club
ohmeta/Mash
Fast genome and metagenome distance estimation using MinHash
ohmeta/MetaVis
high quality and reproducible visualization
ohmeta/phanta
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
ohmeta/scipi
Single cell immune profiling pipeline
ohmeta/treepi
Phylogenetic tree pipeline