Pinned Repositories
dashi
Python Dash visualization of OICR QC data
data_release
Scripts for releasing data generated at OICR to stakeholders
debarcer
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
djerba
Create cancer bioinformatics reports from metadata and workflow output
medips-tools
Scripts for cfMeDIP QC analysis
miso-lims
MISO: An open-source LIMS for NGS sequencing centres, now with detailed samples
robust-paper
Ten Simple Rules for Making Research Software More Robust. Manuscript is published at PLoS Computational Biology. Feedback is welcome!
sequenza
Workflow for Sequenza, cellularity and ploidy
shesmu
Decision-driven action launching system
vidarr
Analysis provenance tracking server
Genome Sequence Informatics's Repositories
oicr-gsi/jq_exporter
oicr-gsi/cbiowrap-workflow
oicr-gsi/tomcat-maven-plugin
Mirror of Apache Tomcat Maven plugin
oicr-gsi/node-starter-kit
Basic setup for a new Node project
oicr-gsi/check_barcodes
oicr-gsi/acquacotta-shiny-run-report
Interactive and dynamic representation of SeqWare Run Reports
oicr-gsi/CPCGene
Tools for the CPCGene project
oicr-gsi/drmaaws
A webservice for interacting with DRMAA-based clusters
oicr-gsi/timetracker
Simple, easy to use, open source time tracking system.
oicr-gsi/rshiny
r shiny server for dynamic plotting of run report and cumulative report data
oicr-gsi/rshiny-instances
project-specific instances of app templates from the rshiny repository
oicr-gsi/illumina-report
oicr-gsi/gsi-ontologies
oicr-gsi/monitoring-tools
Prometheus base tools for building other projects
oicr-gsi/bam-statistics
Scripts that generate statistics for BAM files
oicr-gsi/robust-paper
Ten Simple Rules for Making Research Software More Robust. Manuscript is published at PLoS Computational Biology. Feedback is welcome!
oicr-gsi/vcf-genotype-compare
oicr-gsi/NeatDataStructures
This is the repository for code which uses human genomic data to create data structures for the NEAT genomic read simulator.