Pinned Repositories
23andMeToReporter
Converts 23AndMe raw to a really funky QuantStudio file
clinrisk-modules
ClinRisk risk prediction algorithms for use in clinical care.
doi
nofe.me doi resolution and reader rendering
DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
FHH
This is the repository for the HTML5 version of the Family Health History Tool
flask-swaggerui
This library provides python Flask utilities and static assets for rendering Swagger UI.
flywheel
Object mapper for Amazon's DynamoDB
gnxp.nofe.me
Personal-Drugs
Our PG browser
variantsearch
search for variants (variantsearch.com)
oiiio's Repositories
oiiio/DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
oiiio/Personal-Drugs
Our PG browser
oiiio/variantsearch
search for variants (variantsearch.com)
oiiio/23andMeToReporter
Converts 23AndMe raw to a really funky QuantStudio file
oiiio/clinrisk-modules
ClinRisk risk prediction algorithms for use in clinical care.
oiiio/doi
nofe.me doi resolution and reader rendering
oiiio/FHH
This is the repository for the HTML5 version of the Family Health History Tool
oiiio/flask-swaggerui
This library provides python Flask utilities and static assets for rendering Swagger UI.
oiiio/flywheel
Object mapper for Amazon's DynamoDB
oiiio/gnxp.nofe.me
oiiio/gulag-bot
oiiio/helix-python
Python module to access Helix's API
oiiio/HSDN
Maps symptom and disease terms to MeSH IDs
oiiio/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
oiiio/patrons
Patron of Science page for kickstarter backers
oiiio/PharmCAT_ddna
ddna pharmcat
oiiio/Post_imputation_pipeline
Pipeline to add genotyped SNPs back post-imputation (specifically, post-imputation with BEAGLE v4 or later)
oiiio/pynnotator
This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.
oiiio/reader-for-lens
The reader functionality meant for the Lens HTML
oiiio/sets
oiiio/stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
oiiio/SubSampleFastq
A simple program that will "randomly" sub sample a fastq file.
oiiio/synthea
Synthetic Patient Population Simulator
oiiio/tasktiger
Python task queue. Because celery is gross.
oiiio/weasyprint_lambda
Dockerfile image that builds AWS Lambda Layer with native libraries for running WeasyPrint HTML to PDF renderer