Pinned Repositories
BioinfoUgrp
OIST Bioinfo user group
course-scheduler
Python code to generate course schedules for the Graduate School
DenseObjectAnnotation
Tool to annotate objects in images.
DenseObjectDetection
Detection of objects in an image using segmentation
LabVIEW_Dockerfiles
Collection of Dockerfiles and PowerShell scripts to create Docker Images for LabVIEW C.I.
LaTeX-templates
Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal
optinist
calcium imaging pipeline tool
phylogeny-io
treeOT
Usiigaci
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
Okinawa Institute of Science & Technology's Repositories
oist/optinist
calcium imaging pipeline tool
oist/BioinfoUgrp
OIST Bioinfo user group
oist/treeOT
oist/GenomicBreaks
Pairwise Alignment Breakpoint Analysis
oist/plessy_pairwiseGenomeComparison
Draft workflow for pairwise genome comparison
oist/LaTeX-template-phd-thesis
LaTeX Template for OIST Thesis
oist/LuscombeU-CAGE_libraries
Quality control and processing of CAGE libraries
oist/LuscombeU_OikScrambling
Scrambling paper analysis in R
oist/TER-UCE-DB
The Termite UCE Database. Centralization of termite UCE data and assignation of unique identification code.
oist/BrainComputation
Brain Computation: A Hands-on Guidebook
oist/LaTeX-template-phd-thesis-proposal
LaTeX Template for OIST PhD Thesis Proposal
oist/Oikopleuradioica_genomeannotation
Genome annotation of Oikopleura dioica from different geographical locations
oist/SallanU_impressiontray
Dental impression tray for animals (Wibisana et al., 2023)
oist/BioinfoUgrp_DebianMed_Images
GitHub actions workflow to create Debian Med images for OISTs bioinformatics user group.
oist/Chakraborty_GoCD_Configs
Repository containing pipeline configuration files in YAML format for GoCD server configuration.
oist/ChatGptGuessNumber
oist/cpr-samlauth-role-map
Role mapping feature for Drupal 8 SAML Authentication module
oist/gs_admissions_web_redirect
Redirect page from old admissions to new containerized admissions page
oist/iSciComp
JupyterBook: Introduction to Scientific Computation
oist/LuscombeU_last-flask
Remotely run our LAST Nextflow pipeline
oist/plessy_CAGEscan_Nextflow
NextFlow pipeline for CAGEscan
oist/plessy_nf_GenomicBreaks
Draft Nextflow pipeline to convert alignment files and extract basic stats.
oist/plessy_oikgenomes_drat
Drat repository for hosting oik BSgenome packages
oist/plessy_splitspliceleaderpe
Split paired-end read files in two according to presence of splice leader in the first read.
oist/public_preview
Fork of drupal/public_preview with Drupal 10 compatibility
oist/rate_limits
Fork of drupal/rate_limits with Drupal 10 compatibility
oist/replifactory_v7
oist/topcorneR
Plan and analyse large-scale liquid transfers
oist/VisualStimulation
matlab gui for vstim with psychophysics toolbox
oist/zen
Fork of drupal/zen with Drupal 10 compatibility