/tm_calculator_gui

Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives

Primary LanguagePythonMIT LicenseMIT

tm_calculator_gui

Calculates the melting temperature of a user imported forward and reverse primer based on the SantaLucia, 1998 salt correction formula used also in primer3 and primer blast. It can correct the tm calculation based on the existence of additives formamide & DMSO.

Windows and ubuntu linux GUI stadalone programs

GUI executables are avaliable in: DOI

Citation

Olga Tsiouri. (2023). Tm calculator GUI: Windows and ubuntu linux GUI apps that calculate the melting temperature of a user imported forward and reverse primer based on primer blast default parameters. Zenodo. https://doi.org/10.5281/zenodo.7978091

Depedences

  1. python3.10
  2. anaconda/miniconda
  3. Gooey: pip install Gooey
  4. biopython: pip install biopython