oliverchampion
Assistant Professor at the AMC. I work mainly on quantitative MRI for cancer imaging, and most of the scripts will be related to this topic.
Pinned Repositories
Advanced_MRI_lecture_4_qMRI
Exercises for the advanced MRI course, lecture 4 on quantitative MRI
AI_for_medical_imaging_course
This GIT contains the exercises and examples from the UvA/VU AI for medical imaging course.
BScThesis-AutoLiverSeg
Bachelor Thesis: Automatic Liver Segmentation of Quantitative MRI Data using U-Net and SegNet
DCENET
Neural networks for fitting DCE data
DISPENSE
Stack of Spiral Aided Diffusion
Elastix_Matlab_wapper
A very quick and dirty simple wrapper for Elastix. Still requires a elastix installation. Also requires you to define the fitting parameters yourself in a text file. Handy in post processing scripts.
hiddenlayer
Neural network graphs and training metrics for PyTorch, Tensorflow, and Keras.
IVIM_tools
Matlab tools for intravoxel incoherent motion (IVIM) data, including kurtosis, stretched exponential, tri-exponential, mono-exponential and segmented fits in Matlab
IVIMNET
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
PCA_denoising
The PCA denoising matlab algorithm used in the publication "Principal component analysis for fast and model-free denoising of multi b-value diffusion-weighted MR images" by Oliver J Gurney-Champion et al. in physics in medicine and biology in 2019.
oliverchampion's Repositories
oliverchampion/IVIMNET
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
oliverchampion/PCA_denoising
The PCA denoising matlab algorithm used in the publication "Principal component analysis for fast and model-free denoising of multi b-value diffusion-weighted MR images" by Oliver J Gurney-Champion et al. in physics in medicine and biology in 2019.
oliverchampion/DCENET
Neural networks for fitting DCE data
oliverchampion/IVIM_tools
Matlab tools for intravoxel incoherent motion (IVIM) data, including kurtosis, stretched exponential, tri-exponential, mono-exponential and segmented fits in Matlab
oliverchampion/Elastix_Matlab_wapper
A very quick and dirty simple wrapper for Elastix. Still requires a elastix installation. Also requires you to define the fitting parameters yourself in a text file. Handy in post processing scripts.
oliverchampion/Advanced_MRI_lecture_4_qMRI
Exercises for the advanced MRI course, lecture 4 on quantitative MRI
oliverchampion/AI_for_medical_imaging_course
This GIT contains the exercises and examples from the UvA/VU AI for medical imaging course.
oliverchampion/BScThesis-AutoLiverSeg
Bachelor Thesis: Automatic Liver Segmentation of Quantitative MRI Data using U-Net and SegNet
oliverchampion/DISPENSE
Stack of Spiral Aided Diffusion
oliverchampion/hiddenlayer
Neural network graphs and training metrics for PyTorch, Tensorflow, and Keras.
oliverchampion/MR_XCAT_qMRI
oliverchampion/MRI_stuff
some Matlab code to analyse MRI
oliverchampion/Nifti_and_Dicom
Some tools I use to read and write NIFTI and Dicom files.