Pinned Repositories
annotSnpStats
repo for R package annotSnpStats
CHIGP
Capture Hi-C gene prioritiser
cupcake
R Package for PCA analysis of Genome Wide Association Studies (GWAS)
dkCOIN
National Institute of Diabetes and Digestive and Kidney Diseases Consortium Interconnectivity Network
heisenberg
pipeline to call methylation status for immunophenotyping
imd-basis
Code related to immune-mediated disease (IMD) PCA basis creation and projection.
pid_thaventhiran_et_al
Code for Primary Immune Deficiency (PID) analysis presented in Thaventhiran et al.
rCOGS
R package for COGS
useful_scripts
Scripts that I have found useful in everyday work
vseams
Variant set enrichment analysis (of association summary statistics) using multivariate sampling
ollyburren's Repositories
ollyburren/CHIGP
Capture Hi-C gene prioritiser
ollyburren/cupcake
R Package for PCA analysis of Genome Wide Association Studies (GWAS)
ollyburren/imd-basis
Code related to immune-mediated disease (IMD) PCA basis creation and projection.
ollyburren/useful_scripts
Scripts that I have found useful in everyday work
ollyburren/pid_thaventhiran_et_al
Code for Primary Immune Deficiency (PID) analysis presented in Thaventhiran et al.
ollyburren/rCOGS
R package for COGS
ollyburren/annotSnpStats
repo for R package annotSnpStats
ollyburren/as_basis
Code for analysis of rare complex autoimmune phenotypes
ollyburren/astle
cogs analysis for Will
ollyburren/basis_paper
ollyburren/bcfpid
Retrieve variants form BRIDGE BCF files
ollyburren/blockshifter_simulations
Simulation for assessment of Type 1 error rate for blockshifter
ollyburren/captureHIC
Code and docs for integration of GWAS data with capture HIC
ollyburren/chicp-docker
CHiCP installation using Docker containers
ollyburren/chr1swallace.github.io
Web pages
ollyburren/cogs
Functions to process capture Hi-C calls from CHiCAGO.
ollyburren/cogs_paper
ollyburren/degron
Code for degron analysis
ollyburren/django-chicp
ollyburren/django-elastic
Django search app using Elastic search engine
ollyburren/django-pydgin-auth
Authentication and authorisation app
ollyburren/fyr
ollyburren/mobi_project
scripts associated with mobi capture hi-c project
ollyburren/mscogs
Multi SNP COGS
ollyburren/oldwebsite
A personal website for my code and musings
ollyburren/ollyburren.github.io
Build a Jekyll blog in minutes, without touching the command line.
ollyburren/pid
Code for PID analysis
ollyburren/simBasis
misc code to simulate basis scenarios
ollyburren/simGWAS
Simulating the expected output from a GWAS with a given causal model.
ollyburren/thesis