Takes JSON. constructs PATRIC tn-seq run using TRANSIT
usage: p3_tnseq.py [-h] (--jfile JFILE | --jstring JSTRING)
(--sfile SFILE | --sstring SSTRING) [-o O]
optional arguments:
-h, --help show this help message and exit
--jfile JFILE json file for job
{"reference_genome_id":[x],"experimental_conditions":[x],
"transit_params":{key:value}, "output_path":x,
"read_files":x
--jstring JSTRING json string from user input
--sfile SFILE server setup JSON file
--sstring SSTRING server setup JSON string
-o O output directory. defaults to current directory.