olympus-terminal
Programming utilities, bioinformatics workflows, and project-specific data stores. Keywords: shell, python, HPC, genomics, bioinformatics, deep learning
Earth
Pinned Repositories
cli-bioinformatics-tools
common programming tricks to extract/modify data
ComplexHeatmap
Make Complex Heatmaps
conda-envs
conda environments
crb-blast
Conditional Reciprocal Best Blast
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
linuxkit
A toolkit for building secure, portable and lean operating systems for containers
llm-evals
LLM-training
training LLMs
tools
Command line tools - general
tuned-lens
Tools for understanding how transformer predictions are built layer-by-layer
olympus-terminal's Repositories
olympus-terminal/tools
Command line tools - general
olympus-terminal/cli-bioinformatics-tools
common programming tricks to extract/modify data
olympus-terminal/ComplexHeatmap
Make Complex Heatmaps
olympus-terminal/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
olympus-terminal/conda-envs
conda environments
olympus-terminal/llm-evals
olympus-terminal/LLM-training
training LLMs
olympus-terminal/Shell_UNIX_basic
Shell commands (BASH) to processes and organize data in a UNIX/LINUX environment
olympus-terminal/tuned-lens
Tools for understanding how transformer predictions are built layer-by-layer
olympus-terminal/autogen-Feb5th2024
ForkedAutogen
olympus-terminal/aws-utilities
aws cli common commands
olympus-terminal/bagel-March29th2024
A bagel, with everything.
olympus-terminal/captum-July4th2024
Model interpretability and understanding for PyTorch version freeze
olympus-terminal/Data_Visualization
script used for data visualization
olympus-terminal/experimental_data
olympus-terminal/funannotateJan18th2023
Eukaryotic Genome Annotation Pipeline
olympus-terminal/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
olympus-terminal/job-arrays
example job arrays to process sequence data
olympus-terminal/litellm
Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)
olympus-terminal/LLaVA-Apr10th2024
[NeurIPS'23 Oral] Visual Instruction Tuning (LLaVA) built towards GPT-4V level capabilities and beyond.
olympus-terminal/llm-evaluations
olympus-terminal/LLM-implementations
olympus-terminal/mamba-March28th2024
olympus-terminal/mamba-minimal-March28th2024
frozen fork
olympus-terminal/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
olympus-terminal/qlora-May21st2024
QLoRA: Efficient Finetuning of Quantized LLMs
olympus-terminal/R.scripts
olympus-terminal/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
olympus-terminal/safari-conv-nets
Convolutions for Sequence Modeling
olympus-terminal/unix
unix-related commands