olympus-terminal

cli-bioinformatics-tools

common programming tricks to extract/modify data

ComplexHeatmap

Make Complex Heatmaps

conda-envs

conda environments

crb-blast

Conditional Reciprocal Best Blast

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

linuxkit

A toolkit for building secure, portable and lean operating systems for containers

llm-evals

LLM-training

training LLMs

tools

Command line tools - general

tuned-lens

Tools for understanding how transformer predictions are built layer-by-layer

olympus-terminal/tools

Command line tools - general

olympus-terminal/cli-bioinformatics-tools

common programming tricks to extract/modify data

olympus-terminal/ComplexHeatmap

Make Complex Heatmaps

olympus-terminal/hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

olympus-terminal/conda-envs

conda environments

olympus-terminal/llm-evals

olympus-terminal/LLM-training

training LLMs

olympus-terminal/Shell_UNIX_basic

Shell commands (BASH) to processes and organize data in a UNIX/LINUX environment

olympus-terminal/tuned-lens

Tools for understanding how transformer predictions are built layer-by-layer

olympus-terminal/autogen-Feb5th2024

ForkedAutogen

olympus-terminal/aws-utilities

aws cli common commands

olympus-terminal/bagel-March29th2024

A bagel, with everything.

olympus-terminal/captum-July4th2024

Model interpretability and understanding for PyTorch version freeze

olympus-terminal/Data_Visualization

script used for data visualization

olympus-terminal/experimental_data

olympus-terminal/funannotateJan18th2023

Eukaryotic Genome Annotation Pipeline

olympus-terminal/hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

olympus-terminal/job-arrays

example job arrays to process sequence data

olympus-terminal/litellm

Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)

olympus-terminal/LLaVA-Apr10th2024

[NeurIPS'23 Oral] Visual Instruction Tuning (LLaVA) built towards GPT-4V level capabilities and beyond.

olympus-terminal/llm-evaluations

olympus-terminal/LLM-implementations

olympus-terminal/mamba-March28th2024

olympus-terminal/mamba-minimal-March28th2024

frozen fork

olympus-terminal/pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

olympus-terminal/qlora-May21st2024

QLoRA: Efficient Finetuning of Quantized LLMs

olympus-terminal/R.scripts

olympus-terminal/reciprologs

Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

olympus-terminal/safari-conv-nets

Convolutions for Sequence Modeling

olympus-terminal/unix

unix-related commands