olympus-terminal

Programming utilities, bioinformatics workflows, and project-specific data stores. Keywords: shell, python, HPC, genomics, bioinformatics, deep learning

Earth

Pinned Repositories

abyss
:microscope: Assemble large genomes using short reads
Language:C++0 0 00
autogen-Feb5th2024
ForkedAutogen
Language:Jupyter Notebook0 0 00
cli-bioinformatics-tools
basic scripts for various bioinformatic applications
Language:Python1 0 10
ComplexHeatmap
Make Complex Heatmaps
Language:R1 0 00
crb-blast
Conditional Reciprocal Best Blast
Language:Ruby1 1 00
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++1 1 00
job-arrays
example job arrays to process sequence data
Language:Shell1 1 00
Nubeam
Language:C++1 1 00
tools
Command line tools - general
Language:Python3 0 00

olympus-terminal's Repositories

olympus-terminal/tools
Command line tools - general
Language:Python3 0 00
olympus-terminal/cli-bioinformatics-tools
basic scripts for various bioinformatic applications
Language:Python1 0 10
olympus-terminal/ComplexHeatmap
Make Complex Heatmaps
Language:R1 0 00
olympus-terminal/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++1 1 00
olympus-terminal/job-arrays
example job arrays to process sequence data
Language:Shell1 1 00
olympus-terminal/autogen-Feb5th2024
ForkedAutogen
Language:Jupyter Notebook0 0 00
olympus-terminal/conda-envs
conda environments
Language:Shell0 1 00
olympus-terminal/Shell_UNIX_basic
Shell commands (BASH) to processes and organize data in a UNIX/LINUX environment
Language:Shell0 0 00
olympus-terminal/tuned-lens
Tools for understanding how transformer predictions are built layer-by-layer
Language:Python0 0 00
olympus-terminal/aws-utilities
aws cli common commands
Language:Shell1 0
olympus-terminal/bagel-March29th2024
A bagel, with everything.
Language:Python0 0
olympus-terminal/captum-July4th2024
Model interpretability and understanding for PyTorch version freeze
Language:Python0 0
olympus-terminal/Data_Visualization
script used for data visualization
Language:Python0 0
olympus-terminal/experimental_data
1 0
olympus-terminal/funannotateJan18th2023
Eukaryotic Genome Annotation Pipeline
Language:Python0 0
olympus-terminal/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Language:Assembly0 0
olympus-terminal/litellm
Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)
Language:Python0 0
olympus-terminal/LLaVA-Apr10th2024
[NeurIPS'23 Oral] Visual Instruction Tuning (LLaVA) built towards GPT-4V level capabilities and beyond.
Language:Python0 0
olympus-terminal/LLMs-deprecated
Language:Python1 0
olympus-terminal/mamba-March28th2024
Language:Python0 0
olympus-terminal/mamba-minimal-March28th2024
frozen fork
Language:Python0 0
olympus-terminal/plotly-templates
1 0
olympus-terminal/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
Language:Python0 0
olympus-terminal/qlora-May21st2024
QLoRA: Efficient Finetuning of Quantized LLMs
Language:Jupyter Notebook0 0
olympus-terminal/R.scripts
Language:R1 0
olympus-terminal/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Language:Python0 0
olympus-terminal/safari-conv-nets
Convolutions for Sequence Modeling
Language:Assembly0 0
olympus-terminal/slurm
Slurm: A Highly Scalable Workload Manager
Language:C0 0
olympus-terminal/svgwrite
Python Package to write SVG files (UNMAINTAINED)
olympus-terminal/unix
unix-related commands
Language:Shell1 0