omarkr8
A fresh PhD graduate in ecology. This GitHub is my attempt in curating the coding methods for my analyses. Not meant to be replicable.
Pinned Repositories
Natrix2
Open-source bioinformatics pipeline for the preprocessing of raw amplicon sequencing / metabarcoding data.
pychopper
cDNA read preprocessing
Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
ontime
Extract subsets of ONT (Nanopore) reads based on time
EMS_exercise_OKR
EMS is a method to model fit how species ranges vary with environmental gradients. Datasets are not included, so scripts are just for show.
omarkr8's Repositories
omarkr8/EMS_exercise_OKR
EMS is a method to model fit how species ranges vary with environmental gradients. Datasets are not included, so scripts are just for show.