Pinned Repositories
BayesPrism
deconvExplorer
DWLS
DWLS R package patched and maintained to be used in the omnideconv installation
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
methylDeconv
Runs and compares different methylation based cell type deconvolution algorithms
MethylResolver
Robust method for deconvolving bulk tissue methylation data using least trimmed squares (LTS) regression
omnideconv
Unified access to several second-generation deconvolution methods
omnideconv.github.io
SimBu
Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
spacedeconv
A unified interface to spatial transcriptomics deconvolution tools
omnideconv's Repositories
omnideconv/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
omnideconv/omnideconv
Unified access to several second-generation deconvolution methods
omnideconv/spacedeconv
A unified interface to spatial transcriptomics deconvolution tools
omnideconv/SimBu
Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
omnideconv/deconvExplorer
omnideconv/omnideconv.github.io
omnideconv/methylDeconv
Runs and compares different methylation based cell type deconvolution algorithms
omnideconv/MethylResolver
Robust method for deconvolving bulk tissue methylation data using least trimmed squares (LTS) regression
omnideconv/BayesPrism
omnideconv/CDSeq
CDSeq R package patched and maintained to be used in the omnideconv installation
omnideconv/DWLS
DWLS R package patched and maintained to be used in the omnideconv installation
omnideconv/.github
omnideconv/bseqsc
Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
omnideconv/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
omnideconv/MOMF
MOMF R package patched and maintained to be used in the omnideconv installation
omnideconv/MuSiC
Multi-subject Single Cell Deconvolution
omnideconv/scaden
Deep Learning based cell composition analysis with Scaden.
omnideconv/SCDC
SCDC R package patched and maintained to be used in the omnideconv installation