This is a list of typically R code, sequence data, and data visulisation images used in my publications. The subfolders are for individual publications as below...
R code for the paper: Broders K., Aspin A., Bailey J., Chapman T., Portier P., Weir B.S. (2022) Building More Resilient Culture Collections: A Call for Increased Deposits of Plant-Associated Bacteria. Microorganisms. 10(4):741. https://doi.org/10.3390/microorganisms10040741
R code and from the paper: Weir B.S., Johnston, P.R. and U. Damm (2012) The Colletotrichum gloeosporioides species complex. Studies in Mycology 73: 115–180. https://dx.doi.org/10.3114/sim0011
The phylogenetic code and data from the paper: D. M. Macedo, O. L. Pereira, B. T. Hora Júnior, B. S. Weir, R. W. Barreto (2016) Mycobiota of the weed Tradescantia fluminensis in its native range in Brazil with particular reference to classical biological control Australasian Plant Pathology. https://dx.doi.org/10.1007/s13313-015-0388-x
The R code and data from the paper: Weir, B.S.; Paderes, E.P.; Anand, N; Uchida, J.Y.; Pennycook, S.R.; Bellgard, S.E.; Beever, R.E. (2015) A taxonomic revision of Phytophthora Clade 5 including two new species, Phytophthora agathidicida and P. cocois. Phytotaxa 205(1): 21–38. https://dx.doi.org/10.11646/phytotaxa.205.1.2