opain
I'm a Sir Henry Wellcome Postdoctoral Research Fellow at King's College London.
King's College London
Pinned Repositories
Calculating-FUSION-TWAS-weights-pipeline
This is a pipeline for calculating weights for TWAS
eQTL_to_TWAS
Methods for converting eQTL summary statistics into TWAS SNP-weights
GenoPred
Genotype-based Prediction (GenoPred)
Inferred-functional-risk-scoring
R script for generating functionally informed genetic risk scores from TWAS
MDD-TWAS
Transcriptome-wide association study of Major Depressive Disorder
Michigan-Imputation-Helper
PC-projector
R script for calculating reference projected PCs of ancestry
Predicting-TWAS-features
Tool for predicting TWAS features (e.g. gene expression) in a target sample
TWAS-GSEA
R script that performs gene-set or gene property analysis using TWAS results.
TWAS-plotter
R script to make Manhattan-style plot for TWAS
opain's Repositories
opain/GenoPred
Genotype-based Prediction (GenoPred)
opain/TWAS-plotter
R script to make Manhattan-style plot for TWAS
opain/TWAS-GSEA
R script that performs gene-set or gene property analysis using TWAS results.
opain/Calculating-FUSION-TWAS-weights-pipeline
This is a pipeline for calculating weights for TWAS
opain/Predicting-TWAS-features
Tool for predicting TWAS features (e.g. gene expression) in a target sample
opain/MDD-TWAS
Transcriptome-wide association study of Major Depressive Disorder
opain/eQTL_to_TWAS
Methods for converting eQTL summary statistics into TWAS SNP-weights
opain/Inferred-functional-risk-scoring
R script for generating functionally informed genetic risk scores from TWAS
opain/PC-projector
R script for calculating reference projected PCs of ancestry
opain/Michigan-Imputation-Helper
opain/TLPRS
opain/X-Wing
Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations
opain/GenoUtils
opain/tutorial-template
Template for the Read the Docs tutorial