opavon
Neuroscientist turned bioinformatician. I completed a PhD in Neuroscience at UCL. Currently a Bioinformatics Data Scientist Intern at Benevolent AI.
London
Pinned Repositories
AcuteBrainSlices_RecoveryChamber
Parts list to 3D print and assemble a recovery chamber to incubate acute brain slices | CC0-1.0
allenCCF
Tools to work with Allen Inst CCF data in matlab
Branco_Lab_Theses
PAG_brainrender
Code to generate nice renderings of Periaqueductal Gray related data and structures using Brainrender
PAG_ephys_analysis
Code to analyse ephys data from Periaqueductal Gray neurons
PAG_random_generator
Pseudo-random generators to set an order for patching or aspirating cells
PAG_scRNAseq_analysis
Pipeline to analyse scRNA-seq data from neurons (1) isolated from acute midbrain slices of transgenic mice using visually guided aspiration via patch pipettes and (2) processed using SMART-seq2
PAG_scRNAseq_shiny
A small app to inspect scRNA-seq data from neurons (1) isolated from acute midbrain slices of transgenic mice using visually guided aspiration via patch pipettes and (2) processed using SMART-seq2
ThesisTemplate
Thesis template in Word | CC BY-NC-SA 4.0
week1-devops
All Code and Files for Intro to DevOps Week 1 Project
opavon's Repositories
opavon/ThesisTemplate
Thesis template in Word | CC BY-NC-SA 4.0
opavon/PAG_scRNAseq_analysis
Pipeline to analyse scRNA-seq data from neurons (1) isolated from acute midbrain slices of transgenic mice using visually guided aspiration via patch pipettes and (2) processed using SMART-seq2
opavon/PAG_ephys_analysis
Code to analyse ephys data from Periaqueductal Gray neurons
opavon/AcuteBrainSlices_RecoveryChamber
Parts list to 3D print and assemble a recovery chamber to incubate acute brain slices | CC0-1.0
opavon/allenCCF
Tools to work with Allen Inst CCF data in matlab
opavon/Branco_Lab_Theses
opavon/PAG_brainrender
Code to generate nice renderings of Periaqueductal Gray related data and structures using Brainrender
opavon/PAG_random_generator
Pseudo-random generators to set an order for patching or aspirating cells
opavon/PAG_scRNAseq_shiny
A small app to inspect scRNA-seq data from neurons (1) isolated from acute midbrain slices of transgenic mice using visually guided aspiration via patch pipettes and (2) processed using SMART-seq2
opavon/week1-devops
All Code and Files for Intro to DevOps Week 1 Project
opavon/week2-devops
All Code and Files for Intro to DevOps Week 2 Project