bioshiny is a project to develop the R Shiny applications for bioinformatics research.

bioshiny

One-click to create bioshiny Shiny application and plugins
Create and share more plugins.
Using npm and GitHub to share the Shiny applications and plugins (CRAN team limited file size)

Installation

wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_deps_r
wget https://raw.githubusercontent.com/openbiox/bioshiny/master/bin/bioshiny_start
chmod a+x bioshiny_deps_r
chmod a+x bioshiny_start

# For full toolsets
yarn global add bioshiny
bioshiny_deps_r

Usage

# Set bioshiny main database
echo 'export BIOSHINY_CONFIG="~/.bioshiny/shiny.config.yaml" >> ~/.bashrc'
# Set BioInstaller stored database
echo 'export BIO_SOFTWARES_DB_ACTIVE="~/.bioshiny/info.yaml"'
. ~/.bashrc
Rscript -e "bioshiny::set_shiny_workers(1)"
bioshiny_start

# vcfanno and annovar plugin need to set the tools path

How to contribute?

Please fork the GitHub bioshiny repository, modify it, and submit a pull request to us.

Maintainer

Jianfeng Li

License

MIT