Pinned Repositories
biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
genome-maps
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
hpg-aligner
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
hpg-bigdata
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
hpg-pore
Nanopore desc
hpg-variant
A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
iva
Generic Interactive Variant Analysis browser
jsorolla
JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
opencga
An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
Open source for Computational Biology 's Repositories
opencb/opencga
An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
opencb/cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
opencb/jsorolla
JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
opencb/genome-maps
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
opencb/hpg-aligner
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
opencb/biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
opencb/iva
Generic Interactive Variant Analysis browser
opencb/hpg-pore
Nanopore desc
opencb/hpg-bigdata
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
opencb/hpg-variant
A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
opencb/cell-maps
An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks
opencb/bionetdb
BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database
opencb/ga4gh
This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas
opencb/easyngs
EasyNGS provide a rich and interactive web application for NGS data processing
opencb/hpg-libs
C libs for HPG project
opencb/oskar
Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics
opencb/java-common-libs
OpenCB common libs project
opencb/variant
Variant is an ambitious project aimed to provide a complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
opencb/datastore
Datastore library for querying RDBMS and NoSQL databases
opencb/opencb.github.io
opencb/argus
A Python engine for testing and benchmarking REST web services
opencb/opencb.io