openpencil

bayesianmice

A Bayesian model-based investigation of Candida albicans colonization in a preclinical mouse model.

bmixr

Bayesian mixed effects models in R

doodles

lungbiome

Microbiome and cytokine signatures of culture positive bacterial pneumonia and tracheobronchitis in lung transplant recipients.

npbiome

A temporal exploration of nasopharyngeal bacterial communities of infants in the first year of their lives.

openpencil.github.io

Code. Documentation. Research. Open sourced @

openR

R tryout code from the wild

pythonic

A Python miscellany

regeval

A systematic evaluation of high-dimensional, ensemble based regression for exploring large model spaces in microbiome analyses.

statistical_scribbles

Statistical scribbles and code

openpencil/regeval

A systematic evaluation of high-dimensional, ensemble based regression for exploring large model spaces in microbiome analyses.

openpencil/bmixr

Bayesian mixed effects models in R

openpencil/statistical_scribbles

Statistical scribbles and code

openpencil/bayesianmice

A Bayesian model-based investigation of Candida albicans colonization in a preclinical mouse model.

openpencil/doodles

openpencil/lungbiome

Microbiome and cytokine signatures of culture positive bacterial pneumonia and tracheobronchitis in lung transplant recipients.

openpencil/npbiome

A temporal exploration of nasopharyngeal bacterial communities of infants in the first year of their lives.

openpencil/openpencil.github.io

Code. Documentation. Research. Open sourced @

openpencil/openR

R tryout code from the wild

openpencil/pythonic

A Python miscellany

openpencil/rsvbiome

Exploring the host and microbial responses to RSV infections.

openpencil/scripts

Oft-searched solutions

openpencil/statistical_workflows

Scripts demonstrating common statistical workflows.