Pinned Repositories
neurips-2023-scripts
Scripts associated with the 2023 Open Problems competition
neurips2021-notebooks
neurips2021_multimodal_topmethods
neurips2021_multimodal_viash
neurips_2022_saturn_notebooks
Notebooks for exploring data associated with the Open Problems competition on Kaggle, presented at NeurIPS 2022
openproblems
Formalizing and benchmarking open problems in single-cell genomics
openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
task_grn_inference
task_perturbation_prediction
A benchmark on predicting how small molecules change gene expression in different cell types.
website
Website hosted at https://openproblems.bio
Open Problems in Single-Cell Analysis's Repositories
openproblems-bio/openproblems
Formalizing and benchmarking open problems in single-cell genomics
openproblems-bio/openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
openproblems-bio/neurips-2023-scripts
Scripts associated with the 2023 Open Problems competition
openproblems-bio/neurips_2022_saturn_notebooks
Notebooks for exploring data associated with the Open Problems competition on Kaggle, presented at NeurIPS 2022
openproblems-bio/task_ist_preprocessing
openproblems-bio/website
Website hosted at https://openproblems.bio
openproblems-bio/task_grn_inference
openproblems-bio/task_perturbation_prediction
A benchmark on predicting how small molecules change gene expression in different cell types.
openproblems-bio/website-experimental
Experimental website to try out new content for the main website
openproblems-bio/neurips2022_multimodal_topmethods
openproblems-bio/datasets
openproblems-bio/nbt2023-manuscript
openproblems-bio/task_batch_integration
openproblems-bio/task_cyto_batch_integration
openproblems-bio/task_template
This repo is a template to create a new task that has the correct files and structure needed to start a new task.
openproblems-bio/common_resources
This repo contains common resources that can be used for OpenProblems v2 tasks.
openproblems-bio/NeurIPS21_comp_paper_reproducibility
Scripts and notebooks to reproduce the analysis of the NeurIPS 2021 competition paper submitted to PMLR
openproblems-bio/task_spatial_decomposition
openproblems-bio/task_spatial_simulators
Benchmarking spatial simulators
openproblems-bio/base_images
openproblems-bio/core
openproblems-bio/neurips-2022-notebooks
Notebooks used to process the data for the Open Problems competition at NeurIPS 2022
openproblems-bio/nf-openproblems
openproblems-bio/task_cell_cell_communication
Predicting cell-cell interactions between source cell types and target cell types.
openproblems-bio/task_denoising
Removing noise in sparse single-cell RNA-sequencing count data
openproblems-bio/task_dimensionality_reduction
openproblems-bio/task_label_projection
Automated cell type annotation from rich, labeled reference data
openproblems-bio/task_predict_modality
Predicting the profiles of one modality (e.g. protein abundance) from another (e.g. mRNA expression).
openproblems-bio/task_spatially_variable_genes
A benchmark on detecting genes whose expression levels vary across spatial regions.
openproblems-bio/test