opensafely/post-covid-vaccinated

Issues

• Cox models not always fitting for hospitalised COVID phenotype

  #142 opened 2 years ago by RochelleKnight
  2

• COVID incidence plot

  #213 opened 2 years ago by venexia
  0

• Missing mental health prescription code lists

  #98 opened 2 years ago by kurttaylor
  0

• Add additional suppression to table 2

  #171 opened 2 years ago by RochelleKnight
  0

• Table 1 - impose study start/end dates on covid exposure dates

  #204 opened 2 years ago by RochelleKnight
  0

• Create separate datasets for each outcome group

  #167 opened 2 years ago by RochelleKnight
  0

• date of measurements for covariates

  #209 opened 2 years ago by yinghuiwei
  1

• Remove results with high HRs/SEs before plotting

  #225 opened 2 years ago by RochelleKnight
  0

• Update sampling approach

  #222 opened 2 years ago by venexia
  0

• Venn diagram - low events in some venn diagram sections

  #164 opened 2 years ago by RochelleKnight
  1

• Tidy up cox model scripts

  #154 opened 2 years ago by kurttaylor
  1

• Add mental health sensitivity analysis as outcome in study definition

  #152 opened 2 years ago by kurttaylor
  1

• Add exclusion criteria of 'Missing' region category to protocol

  #147 opened 2 years ago by RochelleKnight
  0

• Potentially too many PE and DVT events

  #122 opened 2 years ago by venexia
  1

• Confirm covariates for mental health outcomes

  #112 opened 2 years ago by venexia
  1

• Determine end of follow-up date for each individual at the end of Stage 1

  #135 opened 2 years ago by venexia
  2

• Venn diagrams do not censor outcomes

  #125 opened 2 years ago by venexia
  0

• Add extra parameter to change between normal cut-offs and reduced cut-offs

  #151 opened 2 years ago by kurttaylor
  0

• Check numbers for BMI variables

  #141 opened 2 years ago by kurttaylor
  0

• Check handling of people who enter after the cohort start date in the model code

  #156 opened 2 years ago by venexia
  0

• Diabetes censoring and gestational diabetes specific censoring need to be added to cox scripts in both repos

  #146 opened 2 years ago by RochelleKnight
  1

• Add structure to the output directory

  #130 opened 2 years ago by venexia
  0

• Confirm suspected/confirmed hospitalised covid

  #143 opened 3 years ago by venexia
  0

• Agree whether to make the repo public so we can get actions back

  #139 opened 3 years ago by venexia
  0

• Make decision regarding models for outcomes with <400 post-exposure events

  #134 opened 3 years ago by venexia
  0

• Add diabetes outcomes

  #117 opened 3 years ago by kurttaylor
  1

• Remove people with 'Missing' region category

  #133 opened 3 years ago by RochelleKnight
  0

• Check numbers for covariates

  #124 opened 3 years ago by kurttaylor
  1

• tidy pre process script

  #128 opened 3 years ago by kurttaylor
  2

• No deaths for some outcomes as shown in Venn diagrams

  #116 opened 3 years ago by yinghuiwei
  1

• improve table_2_subgroups computational efficiency

  #114 opened 3 years ago by yinghuiwei
  0

• Change region NA values to 'Missing'

  #103 opened 3 years ago by RochelleKnight
  2

• Add suppression controls to Table 1

  #106 opened 3 years ago by RochelleKnight
  0

• No females with hospitalised COVID

  #108 opened 3 years ago by RochelleKnight
  1

• stage 1 data comments

  #78 opened 3 years ago by yinghuiwei
  6

• Fix sex categories for QA rules in Stage 1

  #96 opened 3 years ago by kurttaylor
  0

• Add mental health ICD10 codes

  #82 opened 3 years ago by venexia
  1

• Make single action for model code

  #63 opened 3 years ago by venexia
  2

• Adapt script to replicate actions for different outcomes

  #62 opened 3 years ago by venexia
  0

• Remove people with history of COVID in Table 1

  #80 opened 3 years ago by RochelleKnight
  0

• Remove people with a history of COVID from Table 2

  #81 opened 3 years ago by RochelleKnight
  0

• Make index_date variable a date variable again

  #75 opened 3 years ago by RochelleKnight
  0

• Remove people with covid infection prior to index date for main analysis

  #41 opened 3 years ago by GenevieveCezard
  0

• Clinical validation pending for self harm codes

  #38 opened 3 years ago by venexia
  0

• Convert stage 1 into a single action

  #61 opened 3 years ago by venexia
  0

• Convert stage 2 into a single action

  #66 opened 3 years ago by venexia
  0

• Add outcome and cohort as commandArgs for excess risk action

  #65 opened 3 years ago by venexia
  2

• Add outcome and cohort as commandArgs for Venn diagram action

  #64 opened 3 years ago by venexia
  1

• ggvenn is not available on opensafely

  #46 opened 3 years ago by yinghuiwei
  0

• Add covid history variable

  #39 opened 3 years ago by GenevieveCezard
  0