Development of a Quantitative Comparison Tool for Plant Models

Installation

Run the script in src/install.sh.

Generate experimental data

Run main.py in src/experiments/vegetative_stages_1_plant and src/experiments/vegetative_stages_10_plant.

Analyse the experimental data

The scripts that analyse the data are located in src/analyse.

To run the datapipeline from the presentation, run the analyse.py script for all reservoirs, targets and experiments using the 3 command line arguments.

For instance:

python3 analyse.py -r 'N' -i 'PARi' -n 1

Video presentation

A video accompanying this research was presented at FSPM2020. A transcript is is provided at presentation/transcript.md. After the conference the video will be available on online.

Licence

INRAe code: CeCILL-C

Our code: MIT