Pinned Repositories
abrfngs2
Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
alignparse
Align sequences and then parse features.
appliedgenomics2021
Materials for Spring 2021 Applied Genomics Course
Avalon-bot
CHM13
The complete sequence of a human genome
cutecharts.py
📉 Hand drawing style charts library for Python
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
DeepMNE-CNN
[Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks
dorado
A LibTorch Basecaller for Oxford Nanopore Reads
oracle5th's Repositories
oracle5th/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
oracle5th/alignparse
Align sequences and then parse features.
oracle5th/CHM13
The complete sequence of a human genome
oracle5th/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
oracle5th/dorado
A LibTorch Basecaller for Oxford Nanopore Reads
oracle5th/genomad
geNomad: Identification of mobile genetic elements
oracle5th/genoPlotR_wrapper
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
oracle5th/gggenomes
A grammar of graphics for comparative genomics
oracle5th/gghalves
✂️ Easy half-half geoms in ggplot2
oracle5th/ggvenn
Venn Diagram by ggplot2, with really easy-to-use API.
oracle5th/google-10000-english
This repo contains a list of the 10,000 most common English words in order of frequency, as determined by n-gram frequency analysis of the Google's Trillion Word Corpus.
oracle5th/Kleborate
oracle5th/kraken2
The second version of the Kraken taxonomic sequence classification system
oracle5th/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
oracle5th/NanoSim
Nanopore sequence read simulator
oracle5th/numpy-100
100 numpy exercises (with solutions)
oracle5th/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
oracle5th/pepper
PEPPER-Margin-DeepVariant
oracle5th/Polypolish
a short-read polishing tool for long-read assemblies
oracle5th/poreCov
SARS-CoV-2 workflow for nanopore sequence data
oracle5th/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
oracle5th/pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
oracle5th/readfish
Read Until scripts
oracle5th/RiboDetector
Accurate and rapid RiboRNA sequences Detector based on deep learning
oracle5th/scDeepCluster
scDeepCluster for Single Cell RNA-seq data
oracle5th/SPMP
Singapore Platinum Metagenomes Project
oracle5th/the-art-of-command-line
Master the command line, in one page
oracle5th/trojai-fuzzing-vision
Trigger search based Trojan detection for computer vision models
oracle5th/Winnowmap
Long read / genome alignment software
oracle5th/zdict.js
汉典网站数据（汉字、拼音、释义等）