oracle5th

oracle5th's Stars

• daewoooo/SVbyEye

  Language:R706

• xolox/python-humanfriendly

  Human friendly input/output for text interfaces using Python

  Language:Python31945

• pangenome/chm13-grch38-liftover

  liftover from the CHM13 T2T assembly to GRCh38 using wfmash

  Language:Shell6

• agshumate/Liftoff

  An accurate GFF3/GTF lift over pipeline

  Language:Python43554

• sortmerna/sortmerna

  SortMeRNA: next-generation sequence filtering and alignment tool

  Language:C++24568

• JackieHanLab/TOSICA

  Transformer for One-Stop Interpretable Cell-type Annotation

  Language:Jupyter Notebook13126

• microbiome/course_2022_miaverse

  Language:TeX32

• mummer4/mummer

  Mummer alignment tool

  Language:C++464107

• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

  Language:R16623

• ewenharrison/finalfit

  Quickly create elegant regression results tables and plots when modelling in R

  Language:HTML26629

• pydantic/pydantic

  Data validation using Python type hints

  Language:Python21.1k1.9k

• smin95/smplot2

  ✨ smplot2 - An R package for plotting standalone and composite figures

  Language:R235

• SebKrantz/collapse

  Advanced and Fast Data Transformation in R

  Language:C65735

• MrOlm/inStrain

  Bioinformatics program inStrain

  Language:Python14533

• sczhou/CodeFormer

  [NeurIPS 2022] Towards Robust Blind Face Restoration with Codebook Lookup Transformer

  Language:Python15.8k3.3k

• arangrhie/merfin

  Evaluate variant calls and its combination with k-mer multiplicity

  Language:C645

• TGAC/KAT

  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

  Language:C++20752

• krassowski/complex-upset

  A library for creating complex UpSet plots with ggplot2 geoms

  Language:Jupyter Notebook46728

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab17120

• victoryang00/libra

  Language:Rust3

• ziyewang/MetaBinner

  Language:Python486

• theislab/scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python418102

• pola-rs/r-polars

  Polars R binding

  Language:R47635

• czbiohub-sf/MIDAS

  Metagenomic Intra-Species Diversity Analysis (MIDAS)

  Language:Python3610

• snayfach/MIDAS

  An integrated pipeline for estimating strain-level genomic variation from metagenomic data

  Language:Python12052

• kassambara/factoextra

  Extract and Visualize the Results of Multivariate Data Analyses

  Language:R356103

• jhclark/memusg

  A 'time'-like utility for Unix that measures peak memory usage

  Language:Python6435

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k206

• lugimzzz/ConGRI

  Language:Python3

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k194