Pinned Repositories
3PD-updated
Repository of the 3PD tool: Rapid design of optimal primers for chromosome conformation capture assays
angelman_ctcf
arpir
Automatic RNA-Seq Pipelines with Interactive Report
ATS-qPCR-Data
Data from qPCR of UBE3A-ATS expression
CpG_Me
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
dcsoto.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
DMRfinder
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
ENCODE-rna-seq-pipeline
oran-gutierrez-fugon's Repositories
oran-gutierrez-fugon/CpG_Me
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
oran-gutierrez-fugon/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
oran-gutierrez-fugon/3PD-updated
Repository of the 3PD tool: Rapid design of optimal primers for chromosome conformation capture assays
oran-gutierrez-fugon/angelman_ctcf
oran-gutierrez-fugon/arpir
Automatic RNA-Seq Pipelines with Interactive Report
oran-gutierrez-fugon/ATS-qPCR-Data
Data from qPCR of UBE3A-ATS expression
oran-gutierrez-fugon/dcsoto.github.io
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
oran-gutierrez-fugon/DMRfinder
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
oran-gutierrez-fugon/ENCODE-rna-seq-pipeline
oran-gutierrez-fugon/FitHiChIP
Statistically Significant loops from HiChIP data
oran-gutierrez-fugon/pipe4C
4C-seq processing pipeline
oran-gutierrez-fugon/Prader-Willi-Syndrome-Analysis
oran-gutierrez-fugon/python_focus_group
oran-gutierrez-fugon/RNA-seq
RNA-seq alignment and analysis pipeline
oran-gutierrez-fugon/tools_for_HiChIP
tools in python for HiChIP pipeline