- Developed for: Rachel
- Team: Prochiantz
- Date: March 2023
- Software: Fiji
3D images taken with a x25 objective
3 channels:
- 405: DNA
- 642: Foci X
- 561: Foci Y
- Detect nuclei with Cellpose
- Detect foci X and foci Y with Stardist
- Compute foci number in each nucleus
- 3DImageSuite Fiji plugin
- CLIJ Fiji plugin
- Cellpose conda environment + cyto2 model
- Stardist conda environment + fociRNA-1.2.zip (homemade) model
Version 1 released on March 3, 2023