osercinoglu
Assistant Professor of Bioengineering at GTU, Kocaeli, Turkey.
Gebze Technical UniversityGebze, Kocaeli, Turkey
Pinned Repositories
arpeggio
Calculation of interatomic interactions in molecular structures
bioinformatics_gtubeng
Stores learning material (resources, exercises, homeworks) for bioinformatics courses taught at Gebze Technical University Department of Bioengineering.
costbio.github.io
The home of Computational Structural Biology Research Group led by Dr. Onur Serçinoğlu at GTU Bioengineering Department
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
data-science-ipython-notebooks
Continually updated Data Science Python Notebooks: Spark, Hadoop MapReduce, HDFS, AWS, Kaggle, scikit-learn, matplotlib, pandas, NumPy, SciPy, and various command lines.
osercinoglu's Repositories
osercinoglu/bioinformatics_gtubeng
Stores learning material (resources, exercises, homeworks) for bioinformatics courses taught at Gebze Technical University Department of Bioengineering.
osercinoglu/costbio.github.io
The home of Computational Structural Biology Research Group led by Dr. Onur Serçinoğlu at GTU Bioengineering Department
osercinoglu/arpeggio
Calculation of interatomic interactions in molecular structures
osercinoglu/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
osercinoglu/data-science-ipython-notebooks
Continually updated Data Science Python Notebooks: Spark, Hadoop MapReduce, HDFS, AWS, Kaggle, scikit-learn, matplotlib, pandas, NumPy, SciPy, and various command lines.
osercinoglu/datasciencecoursera
osercinoglu/datasharing
The Leek group guide to data sharing
osercinoglu/DeepUnderstandingOfDeepLearning
Python code accompanying the course "A deep understanding of deep learning (with Python intro)"
osercinoglu/django-celery-mastery
A learning repository for django-celery-mastery
osercinoglu/ENCoM
Coarse-grained Normal Mode Analysis software
osercinoglu/frustratometeR
osercinoglu/frustratometer2
This repository contains the pipeline for running the frustratometer software
osercinoglu/grinn
Repository for (the upcoming version of) gRINN.
osercinoglu/grinn_v1
osercinoglu/IMGTHLA
Github for files currently published in the IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
osercinoglu/MDPerTool_GUI
Perturbation based Allosteric Pathway Finder
osercinoglu/mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
osercinoglu/mlclass
Python code for Machine Learning course from Coursera
osercinoglu/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
osercinoglu/Pcode
Python 3 IDE
osercinoglu/pdb-tools
Set of utility scripts to manipulate PDB files
osercinoglu/pdb2fasta
Take a PDB file and spit out protein sequence in 3 or 1 letter format
osercinoglu/pdbtools
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
osercinoglu/pdbtools-1
Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.
osercinoglu/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
osercinoglu/pySCA
A python implementation of the Statistical Coupling Analysis (SCA)
osercinoglu/sbm-openmm
Python library to run structure based model (SBM) simulations using the OpenMM toolkit
osercinoglu/test-repo
osercinoglu/timeout
A script to measure and limit CPU time and memory consumption of black-box processes in Linux