Pinned Repositories
elaspic2
Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
conda-recipes-extra
csc343-ta-notes
Interactive tutorial notebooks for CSC343 - Introduction to Databases.
gseapy
Gene Set Enrichment Analysis in Python
MMTK
protein-adjacency-net
Classifier trained to predict whether a protein sequence matches an adjacency network and a GAN trained to fool the classifier.
proteinsolver
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
uniparc_xml_parser
UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).
pmc-tables
Extract relational tables from PubMed Central.
ostrokach's Repositories
ostrokach/proteinsolver
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
ostrokach/csc343-ta-notes
Interactive tutorial notebooks for CSC343 - Introduction to Databases.
ostrokach/uniparc_xml_parser
UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).
ostrokach/drug-combinations
Predicting synergistic drug combinations.
ostrokach/drug-combinations-az
Predicting synergistic drug combinations in the AstraZeneca-Sanger drug combination prediction DREAM challenge.
ostrokach/protein-adjacency-net
Classifier trained to predict whether a protein sequence matches an adjacency network and a GAN trained to fool the classifier.
ostrokach/2021
ostrokach/aa_subtypes
Code for the preprint: Exploring amino acid functions and positional subtypes in a deep mutational landscape
ostrokach/alphafold
Open source code for AlphaFold.
ostrokach/apache-beam-feedstock
A conda-smithy repository for apache-beam.
ostrokach/beam
Apache Beam
ostrokach/beam-notebooks
ostrokach/bioconda-recipes
Conda recipes for the bioconda channel.
ostrokach/cookiecutter-pypackage
Cookiecutter template for a Python package.
ostrokach/cpython
The Python programming language
ostrokach/csc343-jdbc-practice
Examples of using jdbc to access PostgreSQL
ostrokach/datathon_2018
ostrokach/docker-images
Repository to host the Docker images files used in conda-forge
ostrokach/ENCoM
Coarse-grained Normal Mode Analysis software
ostrokach/funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
ostrokach/msaview
ostrokach/ostrokach
ostrokach/python-markdown-math
Math extension for Python-Markdown
ostrokach/python-ta
ostrokach/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
ostrokach/scihub-manuscript
Manuscript for the Sci-Hub Coverage Study
ostrokach/tabula-java
Extract tables from PDF files
ostrokach/vuepress
📝 Minimalistic Vue-powered static site generator
ostrokach/winter
WInte.r is a Java framework for end-to-end data integration. The WInte.r framework implements well-known methods for data pre-processing, schema matching, identity resolution, data fusion, and result evaluation.
ostrokach/xssp
Create DSSP and HSSP files