Pinned Repositories
African_A.thaliana
Durvasula and Fulgione et al 2017. "African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana" PNAS 2017, 114(20):5213-5218. URL: http://www.pnas.org/content/114/20/5213.long
bnn
bee detection conv net for a rasp pi on side of a hive
CloverAnalysisPipeline
DLpipeline
Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning
eucleg
hisat2
Graph-based alignment (Hierarchical Graph FM index)
LandscapeGenomics
Tutorials for bioinformatics and data analysis related to landscape genomics
Liftoff
An accurate GFF3/GTF lift over pipeline
lrscaf
TGS scaffolding
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
otrnda's Repositories
otrnda/DLpipeline
Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning
otrnda/Liftoff
An accurate GFF3/GTF lift over pipeline
otrnda/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
otrnda/African_A.thaliana
Durvasula and Fulgione et al 2017. "African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana" PNAS 2017, 114(20):5213-5218. URL: http://www.pnas.org/content/114/20/5213.long
otrnda/bnn
bee detection conv net for a rasp pi on side of a hive
otrnda/CloverAnalysisPipeline
otrnda/eucleg
otrnda/hisat2
Graph-based alignment (Hierarchical Graph FM index)
otrnda/LandscapeGenomics
Tutorials for bioinformatics and data analysis related to landscape genomics
otrnda/lrscaf
TGS scaffolding
otrnda/msmc-tools
Tools and Utilities for msmc and msmc2
otrnda/perceptions
Perceptions of Probability and Numbers
otrnda/PheWAS
The PheWAS R package
otrnda/py-faster-rcnn
Faster R-CNN (Python implementation) -- see https://github.com/ShaoqingRen/faster_rcnn for the official MATLAB version
otrnda/rMVP
A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
otrnda/tensorqtl
Ultrafast QTL mapper based on tensorflow
otrnda/VoTT
Visual Object Tagging Tool: An electron app for building end to end Object Detection Models from Images and Videos.