/466-final-project-public

CS466 Final Project - CT HMM for ALS Progression

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CS466 Final Project - CT HMM for ALS Progression

Michael Colomb, Brian Luc, Ophir Sneh, and Sam Cheung's final project for CS466.

We used a Continuous-Time Hidden Markov Model to model the progression of Amytrophic Lateral Sclerosis (ALS). More information about the project and our findings can be found in our paper.

Usage

The following command can be used to test/train our model. More information can be found by using the -h flag.

usage: main.py [-h] [-M N_STATES] [-e EPOCHS] [-s SAVE_FILENAME]
               [-l LOAD_FILENAME] [-t SAVE_EPOCHS] [-p PLOT_FILENAME]
               [-n NUM_PIDS] [-r]
               data_csv

NOTE: Make sure you are using python 3.7.