This is the repository to store codes and commands for the maize NC358 assembly and analyses. Please refer to different folders for different steps of the analyses, including:
- Read depth downsampling and read length shifting
- Genome Assembly
- Gap fixing
- Polishing
- Super-scaffolding
- Generation of pseudomolecules
- Gene annotation
- LTR_analysis
- Assessing component assemblies
- Figure plotting
Scripts in this repository are licensed under General Public License v3.
For information inquiry please email R. Kelly Dawe (kdawe@uga.edu), Candice N. Hirsch (cnhirsch@umn.edu), Matthew B. Hufford (mhufford@iastate.edu), or Doreen Ware (ware@cshl.edu).