outbreak.info
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research.
Pinned Repositories
biothings_covid19
Biothings plugin for JHU CSSE COVID-19 cases
covid_altmetrics
genomics_api
litcovid
parser for LitCOVID Publications
outbreak.api
The data API server for outbreak.info
outbreak.info
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
outbreak_parser_tools
python-outbreak-info
Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info
R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
wastewater
Parser to incorporate to query lineage wastewater
outbreak.info's Repositories
outbreak-info/outbreak.info
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
outbreak-info/R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
outbreak-info/outbreak.api
The data API server for outbreak.info
outbreak-info/biothings_covid19
Biothings plugin for JHU CSSE COVID-19 cases
outbreak-info/python-outbreak-info
Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info
outbreak-info/covid_altmetrics
outbreak-info/litcovid
parser for LitCOVID Publications
outbreak-info/wastewater
Parser to incorporate to query lineage wastewater
outbreak-info/covid19_LST_annotations
outbreak-info/covid_pdb_datasets
Parser to upload SARS-CoV-2 and COVID-19-related protein strutures
outbreak-info/dataverses
outbreak-info/genomics_api
outbreak-info/outbreak_parser_tools
outbreak-info/topic_classifier
outbreak-info/.github
outbreak-info/biorxiv
data plugin for covid related publications from biorvix
outbreak-info/clinical_trials
Parser to import COVID-19 clinical trials from clinicaltrials.gov
outbreak-info/covid19_LST_report_data
repository for parsed covid19LST reports
outbreak-info/covid19_LST_reports
outbreak-info/covid_figshare
Parser to upload COVID-19-related Figshare entries and standardize to schema.org/outbreak.info schema
outbreak-info/covid_imperial_college
outbreak.info meta data parser for Imperial College London resources
outbreak-info/covid_who_clinical_trials
Parser to incorporate COVID-19 clinical trial data from the WHO International Clinical Trials Registry Platform
outbreak-info/growth_rate
outbreak-info/outbreak-network
outbreak.network list
outbreak-info/outbreak-reporter
outbreak-info/outbreak-resources-paper
Figures and data for the outbreak.info resources paper
outbreak-info/outbreak.info-resources
A curated repository of metadata of resources on COVID-19 and SARS-CoV-2
outbreak-info/outbreak_preprint_matcher
outbreak-info/protocolsio
COVID-19 related Protocol metadata from Protocols.io
outbreak-info/significance