oveoyas

oveoyas's Stars

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  735163

• cmkobel/CompareM2

  🦠📇 Microbial genomes-to-report pipeline

  Language:Python543

• collinwa/MCFA

  Language:Jupyter Notebook183

• jeffalstott/powerlaw

  Language:Jupyter Notebook607134

• Python-Markdown/markdown

  A Python implementation of John Gruber’s Markdown with Extension support.

  Language:Python3.8k862

• MetabolicAtlas/standard-GEM

  The standard for open-source GEMs on GitHub

  195

• fmaguire/WoLFPSort

  WoLFPSort v0.2 source code as original server no longer available

  Language:HTML911

• SysBioChalmers/RAVEN

  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

  Language:MATLAB10153

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k18.4k

• opencobra/memote

  memote – the genome-scale metabolic model test suite

  Language:HTML12828

• tqdm/tqdm

  :zap: A Fast, Extensible Progress Bar for Python and CLI

  Language:Python28.8k1.4k

• tuxu/ethz-thesis

  LaTeX template for a PhD thesis at ETH Zurich

  Language:TeX9548

• networkx/networkx

  Network Analysis in Python

  Language:Python15k3.3k

• VirtualMetabolicHuman/AGORA

  The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.

  207

• cdanielmachado/carveme

  CarveMe: genome-scale metabolic model reconstruction

  Language:Python15953

• cdanielmachado/framed

  framed: a metabolic modeling package for python

  Language:Python2510

• maranasgroup/lll-FVA

  Localized loop-less flux variability analysis for genome-scale metabolic models

  Language:Matlab3

• konstantint/matplotlib-venn

  Area-weighted venn-diagrams for Python/matplotlib

  Language:Jupyter Notebook51668

• maranasgroup/Optimization_Methods_in_Metabolic_Networks

  Examples for Optimization Methods in Metabolic Networks (ISBN: 978-1-119-02849-9)

  Language:GAMS72

• opencobra/COBRA.jl

  High-level, high-performance, constraint-based reconstruction and analysis in Julia

  Language:Julia6231

• mwaskom/seaborn

  Statistical data visualization in Python

  Language:Python12.6k1.9k

• cshenry/fba_tools

  A suite of metabolic modeling tools created using the KBase SDK

  Language:Perl821

• kierzek/MUFINS

  MUFINS: Multi-Formalism Interaction Network Simulator

  Language:C++51

• jlomnitz/design-space-toolbox

  The core C library of the Design Space Toolbox V2 that facilitates analysis of mathematical models using a new, parameter-independent, modeling approach.

  Language:C31

• kemayo/sublime-text-git

  Plugin for some git integration into sublime text

  Language:Python2.8k390

• opencobra/optlang

  optlang - sympy based mathematical programming language

  Language:Python25252

• SublimeText/LaTeXTools

  LaTeX plugin for Sublime Text

  Language:Python2k366

• kragniz/cookiecutter-pypackage-minimal

  A minimal template for python packages

  Language:Python203106

• mendessoares/MMinte

  Language:Python1610

• supermihi/gurobimh

  Drop-in replacement for Gurobi's gurobipy python interface that supports Python3.4 and is much more efficient

  Language:Python2710