Owkin

charts

Helm charts maintained by Owkin

DSB2017

Data Science Bowl 2017 : Lung Cancer Detection

FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

grad-cnns

Code and manuscript for "Efficient Per-Example Gradient Computations in Convolutional Neural Networks"

GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

HE2RNA_code

Train a model to predict gene expression from histology slides.

HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

idash-2020

iDASH 2020 - Owkin submission

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

scancovia

owkin/PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

owkin/FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

owkin/HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

owkin/HE2RNA_code

Train a model to predict gene expression from histology slides.

owkin/GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

owkin/charts

Helm charts maintained by Owkin

owkin/fedeca

Code repository associated with the FedECA article

owkin/benchmark_flamby

This is an example to showcase how one can use benchopt in combination with FLamby in order to be able to create and share reproducible reports about performance of new FL strategies.

owkin/SRATTA

Implementation of the SRATTA paper

owkin/hte

owkin/CovadjustSim

Simulation Studies of the effect of covariate adjustment on the statistical power of treatment effect estimation in a clinical tiral

owkin/drl-evaluation

Robust evaluation of DRL methods for survival and gene essentiality prediction on bulk RNAseq

owkin/EUCAIM_Substra_demo

Substra demo for EUCAIM project

owkin/deepdeconv-fork

Deep probabilistic analysis of single-cell omics data

owkin/docker-dependency-updater

Checks system dependencies and update them if required

owkin/pca_substrafl

A high-level federated learning Python library used to run complex federated learning experiments at scale on a Substra network

owkin/vissl

VISSL is FAIR's library of extensible, modular and scalable components for SOTA Self-Supervised Learning with images.

owkin/deepdeconv

Deep probabilistic analysis of single-cell omics data

owkin/pacpaint

owkin/diag-back-itw

owkin/fabric-sdk-go

owkin/HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

owkin/icml_2022_report

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

owkin/mmdetection_histomics

Fork of OpenMMLab Detection Toolbox and Benchmark

owkin/OAH-Clone-Test

Test Clone Logs

owkin/openslide-rs

Rust bindings for Openslide

owkin/owkin-sam

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

owkin/philips-isyntax-rs

Rust bindings for Philips Pathology SDK

owkin/python-github-backup

backup a github user or organization

owkin/ssh-proxy

🐳 Dockerized SSH bastion to proxy SSH connections to arbitrary containers.