Owkin

charts

Helm charts maintained by Owkin

DSB2017

Data Science Bowl 2017 : Lung Cancer Detection

fedpydeseq2

A federated implementation of PyDESeq2, based on Substra.

FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

grad-cnns

Code and manuscript for "Efficient Per-Example Gradient Computations in Convolutional Neural Networks"

GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

HE2RNA_code

Train a model to predict gene expression from histology slides.

HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

scancovia

owkin/PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

owkin/FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

owkin/HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

owkin/GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

owkin/fedeca

Code repository associated with the FedECA article

owkin/fedpydeseq2

A federated implementation of PyDESeq2, based on Substra.

owkin/benchmark_flamby

This is an example to showcase how one can use benchopt in combination with FLamby in order to be able to create and share reproducible reports about performance of new FL strategies.

owkin/drl-evaluation

Robust evaluation of DRL methods for survival and gene essentiality prediction on bulk RNAseq

owkin/gbm_hackathon

owkin/hte

owkin/deepdeconv-fork

Deep probabilistic analysis of single-cell omics data

owkin/EUCAIM_Substra_demo

Substra demo for EUCAIM project

owkin/docker-dependency-updater

Checks system dependencies and update them if required

owkin/legitimate-uq-metrics

This repository contains the code implementation to reproduce the experiments presented in our paper on uncertainty quantification metrics for classification tasks.

owkin/plism-benchmark

Official repository for PLISM robustness benchmark of histology foundation models

owkin/deepdeconv

Deep probabilistic analysis of single-cell omics data

owkin/fedpydeseq2-datasets

owkin/fedpydeseq2-paper-experiments

owkin/cytocommunity_ofta

A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.

owkin/diag-back-itw

owkin/geosketch

Geometry-preserving random sampling

owkin/HE2TEAD

owkin/mmdetection_histomics

Fork of OpenMMLab Detection Toolbox and Benchmark

owkin/OAH-Clone-Test

Test Clone Logs

owkin/Open-Reasoner-Zero

Official Repo for Open-Reasoner-Zero

owkin/openslide-rs

Rust bindings for Openslide

owkin/owkin-sam

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

owkin/philips-isyntax-rs

Rust bindings for Philips Pathology SDK

owkin/python-github-backup

backup a github user or organization

owkin/sparsesurv