Pinned Repositories
covidskills
A django app that can match people to projects, based on a common skills inventory.
data_core_manager
A django app for managing infrastructure, projects and users of an institutional data core
genomepy
A set of python modules for interacting with your local genome data, ncbi, and the Tuxedo suite
htseq-transcriptome
htseq script to count reads multiply mapping to a transcriptome assembly
library_bioinformatics_service
This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.
unconcealed
A python package to assist visualization of image manipulation signatures
datacatalog
A django app for describing datasets and the governance required for their access. Also manages data use agreements associated with the data.
datacore_web_manager
A django app for managing a data core environment, including tracking of users, projects, documentation, authorization, and software.
dcfront
app that manages the front end of the datacore website.
persons
a Django app to provide a means of managing people, departments and organizations
oxpeter's Repositories
oxpeter/data_core_manager
A django app for managing infrastructure, projects and users of an institutional data core
oxpeter/genomepy
A set of python modules for interacting with your local genome data, ncbi, and the Tuxedo suite
oxpeter/unconcealed
A python package to assist visualization of image manipulation signatures
oxpeter/covidskills
A django app that can match people to projects, based on a common skills inventory.
oxpeter/htseq-transcriptome
htseq script to count reads multiply mapping to a transcriptome assembly
oxpeter/library_bioinformatics_service
This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.
oxpeter/ortholotree
Search and evaluate gene orthologs using hmm and phylogeny
oxpeter/python_template
a basic template that will provide useful functionality for the majority of my quick python scripts
oxpeter/small_fry
a miscellany of independent scripts for a multitude of (primarily) bioinformatic tasks.
oxpeter/2017-11-15-WCM
oxpeter/bioinformatics_by_jove
Demonstration of library bioinformatics and jupyter notebooks
oxpeter/broodswap
Time course analysis of transitions between reproductive and brood care phases in the clonal raider ant, Ooceraea biroi
oxpeter/dbug
notes and materials from dbug meetings
oxpeter/demoextension
Jupytercon extension workshop
oxpeter/flybase_miner
A text mining app for Drosophila genes
oxpeter/goncalo2019
oxpeter/htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
oxpeter/jupyter_module_test
testing the setting of the jupyter mybinder envirtonment
oxpeter/mlanet18_twitter
A jupyter notebook showing how I created the graphics of the twitter discussion at MLA'18
oxpeter/mlanet19
notebooks and output of the twitter analysis for MLA '19 in Chicago
oxpeter/ooceraea_inotocin_expression
Gene expression analysis provided as supplementary data for Fetter et al. (2021)
oxpeter/oxpeter.github.io
oxpeter/python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
oxpeter/semester-biology
oxpeter/shell-genomics
Lesson for the shell for genomics
oxpeter/smartfest2018
Jupyter Notebook demo for the Weill Cornell annual SMARTFest
oxpeter/the-turing-way
Host repository for The Turing Way: a how to guide for reproducible data science
oxpeter/transcleaner
scripts to improve or filter transcriptome assemblies
oxpeter/uniprot
retrieve protein sequence identifiers and metadata from http://uniprot.org
oxpeter/vaccination_maps
maps of vaccination rate rollout in Australia