Oxford Protein Informatics Group

Oxford, United Kingdom

Pinned Repositories

AbLang
AbLang: A language model for antibodies
Language:Python130 3 924
ABlooper
Tool for modelling the CDRs of antibodies
Language:Python47 1 012
ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
Language:Python192 11 7392
AntiFold
Improved antibody structure-based design using inverse folding
Language:Python81 3 1311
CaLM
Protein language model trained on coding DNA
Language:Python41 1 910
DeLinker
Language:Python120 6 034
DEVELOP
Language:Python56 1 013
dlab-public
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
Language:HTML31 1 09
ImmuneBuilder
Predict the structure of immune receptor proteins
Language:Jupyter Notebook122 5 031
Paragraph
Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
Language:Python33 1 07

Oxford Protein Informatics Group's Repositories

oxpig/ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
Language:Python192 11 7392
oxpig/AbLang
AbLang: A language model for antibodies
Language:Python130 3 924
oxpig/ImmuneBuilder
Predict the structure of immune receptor proteins
Language:Jupyter Notebook122 5 031
oxpig/AntiFold
Improved antibody structure-based design using inverse folding
Language:Python81 3 1311
oxpig/DEVELOP
Language:Python56 1 013
oxpig/CaLM
Protein language model trained on coding DNA
Language:Python41 1 910
oxpig/DeepCoy
Language:Python30 1 110
oxpig/Graphinity
Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
Language:Python25 2 04
oxpig/AbLang2
An antibody-specific language model focusing on NGL prediction
Language:Python23 0 02
oxpig/PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
Language:Jupyter Notebook23 1 04
oxpig/MolSnapper
Language:Python22 2 04
oxpig/kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
Language:Jupyter Notebook21 1 05
oxpig/CoPriNet
Deep learning for compound price prediction
Language:Python19 1 04
oxpig/SPACE2
Tool for rapid clustering of antibody models by the structure of their CDRs.
Language:Python19 1 04
oxpig/Humatch
Fast, gene-specific joint humanisation of antibody heavy and light chains.
Language:Python9 0 02
oxpig/p-IgGen
p-IgGen: A Generative Paired Antibody Language Model
Language:Python7 0 01
oxpig/SCALOP
Language:Python7 4 43
oxpig/binding-sites
Language:Python6 0 02
oxpig/ECFP-Sort-and-Slice
Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints (ECFPs)
31
oxpig/Fragmenstein
Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse
Language:Python3 0 0
oxpig/OAS-CanonicalForms
Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.
Language:R3 0 0
oxpig/AEV-PLIG
Language:Python21
oxpig/sdAbs_vs_Abs
A comparison of the binding sites of antibodies and single-domain antibodies
Language:Jupyter Notebook2 0 0
oxpig/Tz_her2_affinity_and_beyond
Design and refine high affinity antibody libraries
Language:Jupyter Notebook2 0 0
oxpig/cesped
Cryo-EM Supervised Pose Estimation Dataset utilities
Language:Python1 0 0
oxpig/hummus
Code associated with generating figures from Richardson & Binter et al, 2022.
Language:Jupyter Notebook0 01
oxpig/molecular_rectifier
Given an RDKit molecule that does not sanitise, correct it until it does
Language:Python0 0
oxpig/Protein-Ligand-Interaction-Graphs
oxpig/Python_SmallWorld_API
An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)
Language:Python0 0
oxpig/rdkit_to_params
Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
Language:Python0 0