Oxford Protein Informatics Group

Oxford, United Kingdom

Pinned Repositories

AbLang
AbLang: A language model for antibodies
Language:Python110 3 923
ABlooper
Tool for modelling the CDRs of antibodies
Language:Python41 1 012
ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
Language:Python157 11 6882
AntiFold
Improved antibody structure-based design using inverse folding
Language:Python40 2 53
DeepCoy
Language:Python28 1 010
DeLinker
Language:Python113 6 033
DEVELOP
Language:Python53 1 012
dlab-public
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
Language:HTML30 1 09
ImmuneBuilder
Predict the structure of immune receptor proteins
Language:Jupyter Notebook95 4 024
Paragraph
Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
Language:Python28 1 07

Oxford Protein Informatics Group's Repositories

oxpig/ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
Language:Python157 11 6882
oxpig/DeLinker
Language:Python113 6 033
oxpig/AbLang
AbLang: A language model for antibodies
Language:Python110 3 923
oxpig/ImmuneBuilder
Predict the structure of immune receptor proteins
Language:Jupyter Notebook95 4 024
oxpig/DEVELOP
Language:Python53 1 012
oxpig/ABlooper
Tool for modelling the CDRs of antibodies
Language:Python41 1 012
oxpig/AntiFold
Improved antibody structure-based design using inverse folding
Language:Python40 2 53
oxpig/dlab-public
Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
Language:HTML30 1 09
oxpig/CaLM
Protein language model trained on coding DNA
Language:Python28 1 85
oxpig/DeepCoy
Language:Python28 1 010
oxpig/Paragraph
Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
Language:Python28 1 07
oxpig/Graphinity
Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
Language:Python20 0 02
oxpig/kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
Language:Jupyter Notebook19 0 05
oxpig/PLAbDab
The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
Language:Jupyter Notebook194
oxpig/SPACE2
Tool for rapid clustering of antibody models by the structure of their CDRs.
Language:Python16 1 04
oxpig/AbLang2
An antibody-specific language model focusing on NGL prediction
Language:Python14 0 02
oxpig/PointVS
SE(3)-equivariant point cloud networks for virtual screening
Language:Python9 0 02
oxpig/binding-sites
Language:Python6 0 02
oxpig/MolSnapper
51
oxpig/SCALOP
Language:Python5 4 43
oxpig/Fragmenstein
Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse
Language:Python2 0 0
oxpig/fragment_network_merges
Fragment merging using a graph database
Language:Python2 0 0
oxpig/OAS-CanonicalForms
Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.
2
oxpig/cesped
Cryo-EM Supervised Pose Estimation Dataset utilities
Language:Python1
oxpig/hummus
Code associated with generating figures from Richardson & Binter et al, 2022.
Language:Jupyter Notebook0 01
oxpig/molecular_rectifier
Given an RDKit molecule that does not sanitise, correct it until it does
oxpig/Python_SmallWorld_API
An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)
oxpig/rdkit_to_params
Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
oxpig/sdAbs_vs_Abs
A comparison of the binding sites of antibodies and single-domain antibodies
Language:Jupyter Notebook0 0
oxpig/Tz_her2_affinity_and_beyond
Design and refine high affinity antibody libraries