p-smirnov

PharmacoGx

R package to analyze large-scale pharmacogenomic datasets.

actions

GitHub Actions for the R community

Biobase

Biobase: Base functions for Bioconductor

BiocWorkshops

Workshops for learning Bioconductor

tissue_biomarker_pipeline

A pipeline to run meta-analysis of biomarkers in preclinical PGx data using Snakemake, R, Julia, and the cloud

p-smirnov/tissue_biomarker_pipeline

A pipeline to run meta-analysis of biomarkers in preclinical PGx data using Snakemake, R, Julia, and the cloud

p-smirnov/actions

GitHub Actions for the R community

p-smirnov/Biobase

Biobase: Base functions for Bioconductor

p-smirnov/cellDataForSNF

p-smirnov/CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

p-smirnov/covid19-hcw

p-smirnov/covid19-regional-data

p-smirnov/Covid19Canada

Epidemiological Data from the COVID-19 Outbreak in Canada

p-smirnov/CThripsos

p-smirnov/depmapMuts

p-smirnov/DEworkshop

A modification of Mike Love's DESeq2 workshop, most text is verbatim

p-smirnov/dinov2

PyTorch code and models for the DINOv2 self-supervised learning method.

p-smirnov/DrugCombinationWorkshop

A workshop on drug combination experiment support in CoreGx and PharmacoGx.

p-smirnov/getCTRPv2

p-smirnov/HistopathologyMIL

p-smirnov/hmftools

Various algorithms for analysing genomics data

p-smirnov/Huber-group-EMBL.github.io

Huber group public webpage

p-smirnov/lassonet

Feature selection in neural networks

p-smirnov/mbp-mhw

MBP mhw

p-smirnov/mosaicatcher-pipeline

Integrated workflow for SV calling from single-cell Strand-seq data

p-smirnov/p-smirnov.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

p-smirnov/PharmacoGxDocker

p-smirnov/PLTK

Pughlab Toolkit (PLTK): Repository for all small analysis, plotting, preprocessing, and formatting scripts

p-smirnov/R_utilities

p-smirnov/simple_transformer

p-smirnov/snakemake_profiles

Snakemake profiles

p-smirnov/tbp_manuscript_figures

Code to generate figures in the TBP manuscript

p-smirnov/tinytex

A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live

p-smirnov/valis

Virtual Alignment of pathoLogy Image Series

p-smirnov/wedding

A simple rails app for distributing wedding information and managing the guest list.