pachterlab/sircel

ConnectionRefusedError

Closed this issue · 2 comments

doublehelixlf commented

After install, did a test run with example Drop-Seq reads files, using the following command:

python3 sircel/Sircel_master.py --threads 4 --dropseq --output_dir example_test --reads example/SRR1873277_1m_r2.fastq.gz --barcodes example/SRR1873277_1m_r1.fastq.gz --threads 4 --kallisto_idx /media/.../mouse_GRCm38cdna.idx

The program almost immediately stopped, with the following error message:

Initializing redis-db server
Traceback (most recent call last):
File "/home/feng/anaconda3/lib/python3.5/site-packages/redis/connection.py", line 433, in connect
sock = self._connect()
File "/home/feng/anaconda3/lib/python3.5/site-packages/redis/connection.py", line 488, in _connect
raise err
File "/home/feng/anaconda3/lib/python3.5/site-packages/redis/connection.py", line 476, in _connect
sock.connect(socket_address)
ConnectionRefusedError: [Errno 111] Connection refused

Any suggestion to fix this?

Thanks,
Feng

Simon-Coetzee commented

Try running redis-server before running sircel

doublehelixlf commented

Thanks for the tip, Simon_Coetzee!